Sodium in PDB 8gmv: Crystal Structure of Lysozyme

All present enzymatic activity of Crystal Structure of Lysozyme:
3.2.1.17;

The structure of Crystal Structure of Lysozyme, PDB code: 8gmv was solved by K.H.Nam, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.97 / 2.20
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	79.441, 79.441, 37.113, 90, 90, 90
R / Rfree (%)	18.4 / 23.4

The structure of Crystal Structure of Lysozyme also contains other interesting chemical elements:

Chlorine

(Cl)

3 atoms

The binding sites of Sodium atom in the Crystal Structure of Lysozyme (pdb code 8gmv). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Lysozyme, PDB code: 8gmv:

Sodium binding site 1 out of 1 in the Crystal Structure of Lysozyme


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Lysozyme within 5.0Å range: probe atom residue distance (Å) B Occ A:Na201 b:13.5 occ:1.00 O A:CYS82 2.3 11.8 1.0 O A:SER78 2.4 14.5 1.0 OG A:SER90 2.6 15.1 1.0 O A:HOH309 2.6 8.4 1.0 O A:ARG91 2.6 13.7 1.0 O A:HOH352 2.7 14.6 1.0 CB A:SER90 3.3 13.7 1.0 C A:CYS82 3.4 14.2 1.0 C A:SER78 3.5 13.5 1.0 C A:ARG91 3.7 18.8 1.0 CA A:ASN83 3.8 14.3 1.0 N A:ASN83 4.0 12.3 1.0 N A:ARG91 4.1 15.4 1.0 CA A:SER78 4.1 11.5 1.0 CB A:SER78 4.2 12.1 1.0 C A:SER90 4.3 19.4 1.0 N A:CYS82 4.4 10.7 1.0 CA A:SER90 4.4 20.1 1.0 CA A:ARG91 4.5 13.0 1.0 N A:ASN92 4.5 12.9 1.0 CA A:CYS82 4.6 14.0 1.0 N A:ASP84 4.6 12.8 1.0 O A:ARG79 4.6 19.7 1.0 C A:ARG79 4.7 21.4 1.0 N A:ARG79 4.7 13.4 1.0 CA A:ASN92 4.7 15.2 1.0 CB A:THR87 4.7 17.7 1.0 OD1 A:ASN83 4.7 12.5 1.0 CL A:CL204 4.7 20.4 1.0 CB A:ASN83 4.7 13.9 1.0 C A:ASN83 4.7 12.8 1.0 CB A:ASN92 4.8 15.8 1.0 O A:SER90 4.8 14.1 1.0 OG1 A:THR87 4.9 17.7 1.0 OD1 A:ASP84 4.9 13.0 1.0 CA A:ARG79 4.9 17.2 1.0 N A:TRP80 5.0 22.4 1.0

K.H.Nam, K.H.Nam. N/A N/A.