Sodium in PDB 8g2h: Crystal Structure of PRMT4 with Compound YD1113

All present enzymatic activity of Crystal Structure of PRMT4 with Compound YD1113:
2.1.1.319;

The structure of Crystal Structure of PRMT4 with Compound YD1113, PDB code: 8g2h was solved by X.Song, A.Dong, Y.Deng, R.Huang, C.H.Arrowsmith, A.M.Edwards, J.Min, Structural Genomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.66 / 1.49
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	84.215, 84.215, 130.426, 90, 90, 120
R / Rfree (%)	17.1 / 17.7

The binding sites of Sodium atom in the Crystal Structure of PRMT4 with Compound YD1113 (pdb code 8g2h). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of PRMT4 with Compound YD1113, PDB code: 8g2h:

Sodium binding site 1 out of 1 in the Crystal Structure of PRMT4 with Compound YD1113


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of PRMT4 with Compound YD1113 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na504 b:20.9 occ:1.00 O A:HOH612 2.1 24.7 1.0 O A:HOH761 2.1 48.8 1.0 O A:HOH763 2.2 52.7 1.0 OE1 A:GLN423 2.4 22.4 1.0 O A:HOH664 2.4 40.6 1.0 O2 A:GOL502 2.5 27.5 1.0 O3 A:GOL502 2.5 24.5 1.0 C3 A:GOL502 3.3 27.1 1.0 C2 A:GOL502 3.4 26.1 1.0 CD A:GLN423 3.6 20.6 1.0 C1 A:GOL502 4.0 29.5 1.0 CB A:GLN423 4.2 17.0 1.0 OD1 A:ASP332 4.3 22.8 1.0 O A:HOH629 4.4 28.0 1.0 CG A:GLN423 4.4 18.7 1.0 NE2 A:GLN423 4.5 19.6 1.0 O1 A:GOL502 4.6 32.2 1.0 O A:GLN423 4.7 17.1 1.0

X.Song, A.Dong, Y.Deng, R.Huang, C.H.Arrowsmith, A.M.Edwards, J.Min, Structural Genomics Consortium (Sgc). Crystal Structure of PRMT4 with Compound YD1113 To Be Published.