Sodium in PDB 8gt0: Structure of Falcipain and Human Stefin A Complex

The structure of Structure of Falcipain and Human Stefin A Complex, PDB code: 8gt0 was solved by S.Chakraborty, S.Biswas, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.99 / 3.28
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	65.1, 118.063, 119.34, 90, 90, 90
R / Rfree (%)	27.8 / 29.9

The structure of Structure of Falcipain and Human Stefin A Complex also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 25;

Binding sites:

The binding sites of Sodium atom in the Structure of Falcipain and Human Stefin A Complex (pdb code 8gt0). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 25 binding sites of Sodium where determined in the Structure of Falcipain and Human Stefin A Complex, PDB code: 8gt0:
Jump to Sodium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Sodium binding site 1 out of 25 in the Structure of Falcipain and Human Stefin A Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Falcipain and Human Stefin A Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Na315 b:14.6 occ:1.00 N A:GLN1 4.1 37.0 1.0 C A:GLN1 4.2 55.4 1.0 N A:MET2 4.2 48.1 1.0 CA A:GLN1 4.3 53.0 1.0 C2 A:PG4329 4.3 51.6 1.0 O A:MET2 4.3 38.0 1.0 C A:MET2 4.4 43.7 1.0 CB A:ASN3 4.4 51.3 1.0 O1 A:PG4329 4.5 43.2 1.0 O A:GLN1 4.7 54.6 1.0 OD1 A:ASN3 4.7 61.7 1.0 CG A:ASN3 4.7 59.3 1.0 CA A:MET2 4.7 42.8 1.0 C1 A:PEG319 4.8 31.8 1.0 N A:ASN3 4.8 49.1 1.0 C1 A:PG4329 4.9 41.7 1.0 O2 A:PEG319 5.0 36.5 1.0

Sodium binding site 2 out of 25 in the Structure of Falcipain and Human Stefin A Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Structure of Falcipain and Human Stefin A Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Na316 b:15.1 occ:1.00 CB A:LEU225 4.3 46.5 1.0 O A:LEU225 4.3 49.6 1.0 C A:LEU225 4.7 48.6 1.0 CD1 A:LEU225 4.7 46.0 1.0 CD2 A:LEU225 4.8 41.4 1.0 CG A:LEU225 4.8 47.8 1.0

Sodium binding site 3 out of 25 in the Structure of Falcipain and Human Stefin A Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Structure of Falcipain and Human Stefin A Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Na317 b:21.6 occ:1.00 OD2 A:ASP133 3.1 31.0 1.0 OD1 A:ASP133 3.7 22.3 1.0 O3 A:GOL302 3.7 15.6 1.0 CG A:ASP133 3.8 29.4 1.0 O A:THR233 4.0 32.8 1.0 CG2 A:THR233 4.2 44.4 1.0 C3 A:GOL302 4.2 16.9 1.0 O1 A:EDO325 4.4 31.4 1.0 CA A:THR233 4.5 42.9 1.0 C A:THR233 4.5 45.5 1.0 C1 A:EDO325 4.8 27.4 1.0

Sodium binding site 4 out of 25 in the Structure of Falcipain and Human Stefin A Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 4 of Structure of Falcipain and Human Stefin A Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Na339 b:53.0 occ:1.00 C1 A:EDO327 4.0 63.0 1.0 C2 A:EDO327 4.3 63.1 1.0 O2 A:EDO327 4.6 57.3 1.0 O A:HOH408 4.7 55.3 1.0 O1 A:EDO327 4.8 54.5 1.0

Sodium binding site 5 out of 25 in the Structure of Falcipain and Human Stefin A Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 5 of Structure of Falcipain and Human Stefin A Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Na117 b:30.7 occ:1.00 OD1 B:ASP61 2.5 55.9 1.0 C3 B:GOL112 2.7 38.9 1.0 CG B:ASP61 3.2 59.1 1.0 OD2 B:ASP61 3.3 56.7 1.0 O3 B:GOL112 3.3 41.2 1.0 C2 B:GOL112 4.1 34.8 1.0 C1 B:GOL112 4.2 36.1 1.0 O1 B:GOL112 4.6 40.1 1.0 CB B:ASP61 4.6 55.5 1.0

Sodium binding site 6 out of 25 in the Structure of Falcipain and Human Stefin A Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 6 of Structure of Falcipain and Human Stefin A Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Na118 b:59.1 occ:1.00 OE1 B:GLN17 2.5 63.7 1.0 CD B:GLN17 3.5 64.6 1.0 OH B:TYR53 3.7 60.1 1.0 CG B:GLN17 4.2 63.7 1.0 NE2 B:GLN17 4.5 57.9 1.0 CZ B:TYR53 4.6 58.0 1.0 CD1 B:ILE19 4.8 72.4 1.0 CE2 B:TYR53 4.9 64.3 1.0

Sodium binding site 7 out of 25 in the Structure of Falcipain and Human Stefin A Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 7 of Structure of Falcipain and Human Stefin A Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Na133 b:26.7 occ:1.00 O B:LYS91 3.3 65.4 1.0 C B:LYS91 3.9 65.2 1.0 CA B:ASP92 4.1 72.1 1.0 N B:ASP92 4.2 67.1 1.0 NZ B:LYS56 4.5 63.0 1.0 CG B:LYS91 4.5 54.5 1.0 OE1 B:GLN42 4.7 46.7 1.0 CB B:LYS91 4.7 61.8 1.0 CG B:GLU94 4.8 63.4 1.0 CA B:LYS91 4.9 69.9 1.0 C B:ASP92 4.9 80.3 1.0

Sodium binding site 8 out of 25 in the Structure of Falcipain and Human Stefin A Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 8 of Structure of Falcipain and Human Stefin A Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Na142 b:8.1 occ:1.00 O B:HOH205 4.2 28.4 1.0 O B:HOH235 4.9 18.1 1.0 C9 B:PE8122 4.9 21.6 1.0 O10 B:PE8122 4.9 23.4 1.0

Sodium binding site 9 out of 25 in the Structure of Falcipain and Human Stefin A Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 9 of Structure of Falcipain and Human Stefin A Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Na143 b:29.6 occ:1.00 C5 B:PG4129 2.9 27.5 1.0 O4 B:PG4129 3.1 25.8 1.0 C6 B:PG4129 3.5 25.2 1.0 O5 B:PG4129 4.1 27.0 1.0 O3 B:PG4129 4.1 29.8 1.0 O2 B:SO4119 4.4 81.7 1.0 C7 B:PG4129 4.4 29.2 1.0 C4 B:PG4129 4.6 30.2 1.0 C3 B:PG4129 4.8 32.2 1.0 C8 B:PG4129 4.9 26.2 1.0

Sodium binding site 10 out of 25 in the Structure of Falcipain and Human Stefin A Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 10 of Structure of Falcipain and Human Stefin A Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Na144 b:26.7 occ:1.00 C3 B:PG4126 3.5 31.3 1.0 C4 B:PG4126 4.4 33.6 1.0 O B:HOH233 4.5 6.3 1.0 O2 B:PG4126 4.6 37.7 1.0 C2 B:PG4126 4.9 45.7 1.0

S.Chakraborty, S.Biswas. Structure of Falcipain and Human Stefin A Complex To Be Published.