Sodium in PDB 8gka: Human TRPV3 Tetramer Structure, Closed Conformation

The binding sites of Sodium atom in the Human TRPV3 Tetramer Structure, Closed Conformation (pdb code 8gka). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Human TRPV3 Tetramer Structure, Closed Conformation, PDB code: 8gka:

Sodium binding site 1 out of 1 in the Human TRPV3 Tetramer Structure, Closed Conformation


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Human TRPV3 Tetramer Structure, Closed Conformation within 5.0Å range: probe atom residue distance (Å) B Occ A:Na801 b:47.3 occ:1.00 O B:GLY638 2.3 29.5 1.0 O C:GLY638 2.3 29.5 1.0 O A:GLY638 2.3 29.5 1.0 O D:GLY638 2.3 29.5 1.0 C B:GLY638 3.4 6.2 1.0 C C:GLY638 3.4 6.2 1.0 C D:GLY638 3.4 6.2 1.0 C A:GLY638 3.4 6.2 1.0 CA C:GLY638 4.2 3.0 1.0 CA B:GLY638 4.2 3.0 1.0 CA D:GLY638 4.2 3.0 1.0 CA A:GLY638 4.2 3.0 1.0 N A:LEU639 4.4 8.8 1.0 N B:LEU639 4.4 8.8 1.0 N C:LEU639 4.4 8.8 1.0 N D:LEU639 4.4 8.8 1.0 CA A:LEU639 4.6 13.7 1.0 CA B:LEU639 4.6 13.7 1.0 CA D:LEU639 4.6 13.7 1.0 CA C:LEU639 4.6 13.7 1.0 CD2 A:LEU639 4.9 11.5 1.0 CD2 C:LEU639 4.9 11.5 1.0 CD2 D:LEU639 4.9 11.5 1.0 CD2 B:LEU639 4.9 11.5 1.0

S.Lansky, J.M.Betancourt, J.Zhang, Y.Jiang, E.D.Kim, N.Paknejad, C.M.Nimigean, P.Yuan, S.Scheuring. A Pentameric TRPV3 Channel with A Dilated Pore Nature 2023.
ISSN: ESSN 1476-4687
DOI: 10.1038/S41586-023-06470-1