Sodium in PDB 8gqz: Crystal Structure of Mitochondrial Citrate Synthase (CIT1) From Saccharomyces Cerevisiae

The structure of Crystal Structure of Mitochondrial Citrate Synthase (CIT1) From Saccharomyces Cerevisiae, PDB code: 8gqz was solved by K.Nishio, K.Nakatsukasa, T.Kamura, T.Mizushima, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	31.64 / 1.42
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	62.328, 102.398, 146.87, 90, 90, 90
R / Rfree (%)	16.6 / 19.7

The structure of Crystal Structure of Mitochondrial Citrate Synthase (CIT1) From Saccharomyces Cerevisiae also contains other interesting chemical elements:

Chlorine

(Cl)

5 atoms

The binding sites of Sodium atom in the Crystal Structure of Mitochondrial Citrate Synthase (CIT1) From Saccharomyces Cerevisiae (pdb code 8gqz). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Mitochondrial Citrate Synthase (CIT1) From Saccharomyces Cerevisiae, PDB code: 8gqz:

Sodium binding site 1 out of 1 in the Crystal Structure of Mitochondrial Citrate Synthase (CIT1) From Saccharomyces Cerevisiae


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Mitochondrial Citrate Synthase (CIT1) From Saccharomyces Cerevisiae within 5.0Å range: probe atom residue distance (Å) B Occ A:Na501 b:38.1 occ:1.00 O A:HOH922 2.2 34.4 1.0 O A:HOH946 2.2 34.4 1.0 O B:HOH1007 2.3 38.2 1.0 OD2 A:ASP173 2.4 45.1 1.0 OD1 A:ASP173 2.9 38.8 1.0 CG A:ASP173 3.0 39.6 1.0 O A:HOH748 4.0 38.2 1.0 O A:HOH925 4.0 26.1 1.0 CB A:ASP173 4.4 27.6 1.0 CB A:PRO171 4.7 19.0 1.0

K.Nishio, T.Kawarasaki, Y.Sugiura, S.Matsumoto, A.Konoshima, Y.Takano, M.Hayashi, F.Okumura, T.Kamura, T.Mizushima, K.Nakatsukasa. Defective Import of Mitochondrial Metabolic Enzyme Elicits Ectopic Metabolic Stress. Sci Adv V. 9 F1956 2023.
ISSN: ESSN 2375-2548
PubMed: 37058555
DOI: 10.1126/SCIADV.ADF1956