Sodium in PDB, part 271 (files: 10801-10840),
PDB 8dds-8dw4
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 10801-10840 (PDB 8dds-8dw4).
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8dds (Na: 2) - Cryo-Em Structure of TRPM3 Ion Channel in the Presence of PIP2, STATE1
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8ddt (Na: 1) - Cryo-Em Structure of TRPM3 Ion Channel in the Presence of PIP2, STATE2
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8ddu (Na: 2) - Cryo-Em Structure of TRPM3 Ion Channel in the Presence of PIP2, STATE3
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8ddv (Na: 2) - Cryo-Em Structure of TRPM3 Ion Channel in the Presence of PIP2, STATE4
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8ddx (Na: 1) - Cryo-Em Structure of TRPM3 Ion Channel in Complex with Gbg in the Presence of PIP2, Tethered By Alfa-Nanobody
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8de3 (Na: 2) - Native Serotonin Transporter in Complex with 15B8 Fab Antibody in the Presence of Cocaine
Other atoms:
Cl (1);
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8de4 (Na: 2) - Native Serotonin Transporter in Complex with 15B8 Fab in the Presence of Methamphetamine
Other atoms:
Cl (1);
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8dek (Na: 1) - The Structure of the Glycopeptidase Catalytic Domain Including the Linker of AMUC_1438
Other atoms:
Zn (2);
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8df2 (Na: 12) - The Structure of the 'Alt' Construct of the AMUC_1438 Glycopeptidase
Other atoms:
Ca (4);
Zn (4);
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8dhl (Na: 2) - Tannerella Forsythia Beta-Glucuronidase (L2)
Other atoms:
Ca (4);
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8dir (Na: 3) - The Complex Structure Between Human IGG1 Fc and Its High Affinity Receptor Fcgri H174R Variant
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8djf (Na: 1) - Crystal Structure of RPA3624, A Beta-Propeller Lactonase From Rhodopseudomonas Palustris, with Active-Site Bound Tetrahedral Intermediate
Other atoms:
Ca (1);
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8djr (Na: 1) - Cytosolic Ascorbate Peroxidase From Sorghum Bicolor
Other atoms:
Fe (1);
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8djs (Na: 1) - Cytosolic Ascorbate Peroxidase From Sorghum Bicolor - One Ascorbate Complex
Other atoms:
Fe (1);
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8djt (Na: 1) - Cytosolic Ascorbate Peroxidase From Sorghum Bicolor - Four Ascorbates Complex
Other atoms:
Fe (1);
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8dju (Na: 1) - Cytosolic Ascorbate Peroxidase From Sorghum Bicolor - Bicyclic Dehydroascorbic Acid Complex
Other atoms:
Fe (1);
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8djw (Na: 1) - Cytosolic Ascorbate Peroxidase From Sorghum Bicolor - Hydroperoxo Complex
Other atoms:
Fe (1);
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8djx (Na: 1) - Cytosolic Ascorbate Peroxidase From Sorghum Bicolor - Compound II
Other atoms:
Fe (1);
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8djz (Na: 1) - Crystal Structure of RPA3624, A Beta-Propeller Lactonase From Rhodopseudomonas Palustris, with Active-Site Bound Product
Other atoms:
Ca (1);
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8dk0 (Na: 1) - Crystal Structure of RPA3624, A Beta-Propeller Lactonase From Rhodopseudomonas Palustris, with Active-Site Bound (S)Gamma- Valerolactone
Other atoms:
Ca (1);
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8dl1 (Na: 1) - BOGH13ASUS-E523Q From Bacteroides Ovatus Bound to Maltoheptaose
Other atoms:
Mn (4);
Ca (4);
Cl (1);
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8dmr (Na: 1) - Legionella Macrodomain Effector Mavl R370A in Complex with Adp-Ribose
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8dn0 (Na: 1) - E.Coli Dsba in Complex with N-(2-Fluorophenyl)-5-Methylisoxazole-3- Carboxamide
Other atoms:
F (2);
Cu (1);
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8dop (Na: 6) - Crystal Structure of 2,3-Diketo-5-Methylthiopentyl-1-Phosphate Enolase-Phosphatase From Klebsiella Aerogenes (P1 Form)
Other atoms:
I (12);
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8dq2 (Na: 4) - X-Ray Crystal Structure of Hansschlegelia Quercus Lanmodulin (Lanm) with Lanthanum (III) Bound at pH 7
Other atoms:
La (12);
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8dqm (Na: 4) - Crystal Structure of Isoaspartyl Aminopeptidase From Roseivivax Halodurans Dsm 15395
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8drr (Na: 1) - Product Structure of Sars-Cov-2 Mpro C145A Mutant in Complex with NSP4-NSP5 (C4) Cut Site Sequence
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8drw (Na: 12) - Product Structure of Sars-Cov-2 Mpro C145A Mutant in Complex with NSP9-NSP10 (C9) Cut Site Sequence
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8drx (Na: 1) - Product Structure of Sars-Cov-2 Mpro C145A Mutant in Complex with NSP10-NSP11 (C10) Cut Site Sequence (Form 2)
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8drz (Na: 4) - Product Structure of Sars-Cov-2 Mpro C145A Mutant in Complex with NSP13-NSP14 (C13) Cut Site Sequence
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8ds1 (Na: 5) - Structure of Sars-Cov-2 Mpro in Complex with NSP12-NSP13 (C12) Cut Site Sequence
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8ds2 (Na: 1) - Structure of Sars-Cov-2 Mpro in Complex with the NSP13-NSP14 (C13) Cut Site Sequence (Form 2)
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8dsc (Na: 1) - Human Nampt in Complex with Substrate Nam and Small Molecule Activator Np-A1-R
Other atoms:
Cl (3);
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8dt6 (Na: 2) - Crystal Structure of Dna Polymerase III Beta Subunit From Elizabethkingia Anophelis
Other atoms:
Ca (9);
Cl (2);
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8duz (Na: 1) - Protective Antibody Against Gonococcal Lipooligosaccharide Bound to Peptide Mimetic
Other atoms:
Cl (1);
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8dv3 (Na: 2) - Crystal Structure of Human CD1B Presenting Phosphatidylinositol C34:1
Other atoms:
Cl (6);
I (2);
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8dv4 (Na: 3) - Crystal Structure of the BC8B Tcr-CD1B-Pi Complex
Other atoms:
Cl (3);
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8dvh (Na: 2) - Crystal Structure of Atp-Dependent Lon Protease From Bacillus Subtillis (Bslonba)
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8dw0 (Na: 1) - Glycosylase Muty Variant N146S in Complex with Dna Containing D(8-Oxo- G) Paired with An Enzyme-Generated Abasic Site (Ap) Product and Crystallized with Sodium Acetate
Other atoms:
Fe (8);
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8dw4 (Na: 1) - Glycosylase Muty Variant N146S in Complex with Dna Containing D(8-Oxo- G) Paired with An Abasic Site Product (Ap) Generated By the Enzyme in Crystals By Removal of Calcium
Other atoms:
Fe (4);
Page generated: Fri Jul 28 12:35:38 2023
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