Sodium in PDB 8a1v: Sodium Pumping Nadh-Quinone Oxidoreductase with Substrate Q2

All present enzymatic activity of Sodium Pumping Nadh-Quinone Oxidoreductase with Substrate Q2:
7.2.1.1;

The structure of Sodium Pumping Nadh-Quinone Oxidoreductase with Substrate Q2 also contains other interesting chemical elements:

Iron

(Fe)

4 atoms

The binding sites of Sodium atom in the Sodium Pumping Nadh-Quinone Oxidoreductase with Substrate Q2 (pdb code 8a1v). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Sodium Pumping Nadh-Quinone Oxidoreductase with Substrate Q2, PDB code: 8a1v:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Sodium Pumping Nadh-Quinone Oxidoreductase with Substrate Q2


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Sodium Pumping Nadh-Quinone Oxidoreductase with Substrate Q2 within 5.0Å range: probe atom residue distance (Å) B Occ B:Na607 b:14.2 occ:1.00 O B:VAL275 2.3 12.8 1.0 O B:VAL332 2.3 10.5 1.0 O B:ALA263 2.4 16.6 1.0 O B:HOH708 2.7 15.4 1.0 O B:HOH769 2.8 3.2 1.0 HD11 B:ILE268 3.0 11.4 1.0 OG1 B:THR277 3.2 15.3 1.0 H B:THR277 3.2 11.1 1.0 C B:VAL332 3.3 8.2 1.0 C B:VAL275 3.4 11.4 1.0 C B:ALA263 3.4 14.2 1.0 HB B:VAL332 3.5 12.3 1.0 HA B:VAL332 3.6 10.8 1.0 HB1 B:ALA263 3.6 12.1 1.0 HG1 B:THR277 3.6 12.2 1.0 HA B:VAL275 3.7 10.8 1.0 CD1 B:ILE268 3.8 8.3 1.0 HD13 B:ILE268 3.8 11.4 1.0 HA B:ALA263 3.9 12.3 1.0 N B:THR277 3.9 9.7 1.0 CA B:VAL332 3.9 9.7 1.0 HA2 B:GLY266 4.0 11.9 1.0 CA B:ALA263 4.1 9.0 1.0 HA B:PHE264 4.1 12.2 1.0 CA B:VAL275 4.1 10.5 1.0 HB B:THR277 4.2 11.5 1.0 CB B:VAL332 4.2 13.4 1.0 HA B:LEU333 4.2 10.6 1.0 CB B:THR277 4.2 10.7 1.0 HA B:SER276 4.2 10.9 1.0 O B:GLU274 4.3 16.5 1.0 CB B:ALA263 4.3 8.6 1.0 N B:LEU333 4.4 8.0 1.0 N B:SER276 4.4 6.6 1.0 N B:PHE264 4.4 13.0 1.0 HG12 B:ILE268 4.4 12.3 1.0 HD12 B:ILE268 4.4 11.3 1.0 CA B:THR277 4.6 11.5 1.0 C B:SER276 4.6 9.9 1.0 CA B:SER276 4.6 7.5 1.0 CA B:PHE264 4.6 9.4 1.0 CG1 B:ILE268 4.7 14.2 1.0 CA B:LEU333 4.7 8.4 1.0 O B:HOH729 4.8 4.1 1.0 HB3 B:ALA263 4.8 12.1 1.0 HB B:VAL275 4.8 11.2 1.0 O B:PHE264 4.8 13.0 1.0 HA B:THR277 4.8 11.2 1.0 H B:GLY266 4.8 12.7 1.0 HG23 B:VAL332 4.8 11.8 1.0 CA B:GLY266 4.9 11.0 1.0 C B:PHE264 4.9 11.7 1.0 HD23 B:LEU333 4.9 10.4 1.0 HG12 B:VAL332 4.9 11.2 1.0 HG13 B:ILE268 4.9 12.7 1.0 HB2 B:ALA263 5.0 12.4 1.0

Sodium binding site 2 out of 2 in the Sodium Pumping Nadh-Quinone Oxidoreductase with Substrate Q2


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Sodium Pumping Nadh-Quinone Oxidoreductase with Substrate Q2 within 5.0Å range: probe atom residue distance (Å) B Occ B:Na608 b:20.2 occ:1.00 O B:ASN375 2.4 11.5 1.0 O B:ILE371 2.7 12.6 1.0 C B:ASN375 2.8 10.6 1.0 O B:HOH832 2.9 14.4 1.0 O B:ARG372 3.0 10.5 1.0 H B:ASN375 3.0 8.3 1.0 O B:TYR378 3.2 8.6 1.0 HA B:PRO376 3.2 9.0 1.0 N B:ASN375 3.3 5.3 1.0 N B:PRO376 3.5 10.0 1.0 C B:ARG372 3.5 5.7 1.0 CA B:ASN375 3.5 8.9 1.0 HB3 B:ASN375 3.6 9.3 1.0 O B:HOH758 3.7 9.9 1.0 CA B:PRO376 3.7 9.5 1.0 HA B:ARG372 3.8 9.0 1.0 H B:TYR378 3.8 8.3 1.0 C B:ILE371 3.9 6.2 1.0 C B:TYR378 4.0 6.7 1.0 HA B:PRO379 4.0 9.9 1.0 O B:HOH840 4.0 13.4 1.0 CA B:ARG372 4.1 8.3 1.0 CB B:ASN375 4.1 7.5 1.0 O B:HOH781 4.2 11.9 1.0 C B:PRO376 4.2 9.7 1.0 C B:VAL374 4.2 4.7 1.0 N B:VAL373 4.3 8.9 1.0 N B:VAL374 4.3 7.6 1.0 C B:VAL373 4.3 6.4 1.0 H B:VAL374 4.3 9.3 1.0 O B:HOH756 4.4 7.9 1.0 HA B:ASN375 4.4 8.9 1.0 N B:TYR378 4.5 7.2 1.0 N B:ARG372 4.5 13.2 1.0 O B:PRO376 4.5 10.4 1.0 HA B:VAL373 4.5 10.7 1.0 CA B:VAL373 4.6 7.6 1.0 O B:VAL373 4.6 12.4 1.0 CA B:PRO379 4.7 10.7 1.0 N B:PRO379 4.7 8.5 1.0 HG23 B:ILE371 4.8 8.2 1.0 N B:ALA377 4.8 11.7 1.0 HB2 B:ASN375 4.8 8.0 1.0 CA B:VAL374 4.8 6.2 1.0 CA B:TYR378 4.8 8.1 1.0 CD B:PRO376 4.8 12.0 1.0 H B:VAL373 4.9 9.6 1.0 H B:ALA377 4.9 9.0 1.0 HA B:ILE371 4.9 8.9 1.0 HD3 B:PRO376 5.0 9.4 1.0 O B:VAL374 5.0 11.2 1.0 HG22 B:ILE371 5.0 8.2 1.0 HG3 B:MET322 5.0 12.1 1.0

J.-L.Hau, J.-L.Hau, S.Kaltwasser, J.Vonck, G.Fritz, J.Steuber. N/A N/A.