Sodium in PDB 8a1o: Crystal Structure of the Transpeptidase LDTMT2 From Mycobacterium Tuberculosis in Complex with Acrylamide Analogue 8

The structure of Crystal Structure of the Transpeptidase LDTMT2 From Mycobacterium Tuberculosis in Complex with Acrylamide Analogue 8, PDB code: 8a1o was solved by M.De Munnik, P.A.Lang, J.Brem, C.J.Schofield, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.50 / 1.95
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	76.87, 93, 61.4, 90, 90, 90
R / Rfree (%)	18.8 / 22.5

The structure of Crystal Structure of the Transpeptidase LDTMT2 From Mycobacterium Tuberculosis in Complex with Acrylamide Analogue 8 also contains other interesting chemical elements:

Chlorine

(Cl)

4 atoms

The binding sites of Sodium atom in the Crystal Structure of the Transpeptidase LDTMT2 From Mycobacterium Tuberculosis in Complex with Acrylamide Analogue 8 (pdb code 8a1o). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Transpeptidase LDTMT2 From Mycobacterium Tuberculosis in Complex with Acrylamide Analogue 8, PDB code: 8a1o:

Sodium binding site 1 out of 1 in the Crystal Structure of the Transpeptidase LDTMT2 From Mycobacterium Tuberculosis in Complex with Acrylamide Analogue 8


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Transpeptidase LDTMT2 From Mycobacterium Tuberculosis in Complex with Acrylamide Analogue 8 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1005 b:58.2 occ:1.00 O A:ASN121 3.4 37.3 0.5 O A:ASN121 3.5 37.3 0.5 N A:ARG123 4.0 29.4 1.0 CB A:ARG123 4.0 33.3 1.0 C A:ARG122 4.1 34.2 1.0 C A:ASN121 4.2 36.1 0.5 C A:ASN121 4.2 36.1 0.5 O A:HOH1265 4.3 30.4 1.0 CA A:ARG122 4.3 32.9 1.0 O A:ARG122 4.5 33.9 1.0 OD1 A:ASN121 4.5 41.5 0.5 N A:ARG122 4.5 33.0 1.0 CA A:ARG123 4.6 30.4 1.0 NH1 A:ARG122 4.7 46.1 1.0 CG A:ASP96 4.7 50.1 1.0 OD2 A:ASP96 4.8 53.2 1.0 NE2 A:GLN144 4.8 41.2 1.0 OD1 A:ASP96 4.8 45.7 1.0

M.De Munnik, P.A.Lang, J.Brem, C.J.Schofield. Crystal Structure of the Transpeptidase LDTMT2 From Mycobacterium Tuberculosis in Complex with Acrylamide Analogue 8 To Be Published.