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Sodium in PDB, part 264 (files: 10521-10560), PDB 7xft-7ypy

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 10521-10560 (PDB 7xft-7ypy).
  1. 7xft (Na: 5) - Mucp PDZ2 Domain
  2. 7xjb (Na: 1) - Rat-Comt, Opicapone,Sam and Mg Bond
    Other atoms: Mg (4); Cl (13);
  3. 7xjv (Na: 5) - Crystal Structure of Alpha-1,3-Mannosyltransferase MNT2 From Saccharomyces Cerevisiae, Mn/Gdp-Mannose Form
    Other atoms: Mn (4);
  4. 7xk9 (Na: 1) - Structure of Human BETA2 Adrenergic Receptor Bound to Constrained Isoproterenol
  5. 7xka (Na: 1) - Structure of Human BETA2 Adrenergic Receptor Bound to Constrained Epinephrine
  6. 7xld (Na: 1) - Crystal Structure of Isdh Linker-NEAT3 Bound to A Nanobody (Vhh)
    Other atoms: Mg (1);
  7. 7xma (Na: 2) - Crystal Structure of Bovine Heart Cytochrome C Oxidase, Apo Structure with Dmso
    Other atoms: Fe (4); Zn (2); Cu (6); Mg (2);
  8. 7xmb (Na: 2) - Crystal Structure of Bovine Heart Cytochrome C Oxidase, the Structure Complexed with An Allosteric Inhibitor T113
    Other atoms: Mg (2); Fe (4); Cu (6); Zn (2);
  9. 7xoi (Na: 8) - Aspergillus Sojae Alpha-Glucosidase Asojagdl in Complex with Trehalose
  10. 7xq7 (Na: 1) - The Complex Structure of Wt-Mpro
  11. 7xsf (Na: 2) - Crystal Structure of CLAGL29A
  12. 7xsg (Na: 2) - Crystal Structure of CLAGL29B
  13. 7xsh (Na: 2) - Crystal Structure of CLAGL29B Bound with L-Glucose
  14. 7xts (Na: 2) - The Apo Structure of the Engineered Tfcut S130A
  15. 7xtt (Na: 2) - The Structure of Engineered Tfcut S130A in Complex with Mhet
  16. 7xu8 (Na: 1) - Structure of the Complex of Camel Peptidoglycan Recognition Protein- Short (Pgrp-S) with Heptanoic Acid at 2.15 A Resolution.
  17. 7xxk (Na: 2) - Crystal Structure of Sars-Cov-2 N-Ctd in Complex with Gmp
    Other atoms: K (9); Cl (13);
  18. 7xyr (Na: 9) - Cystal Structure of Beta-Glucuronidase From Bacteroides Thetaiotaomicron
    Other atoms: Mg (22);
  19. 7y44 (Na: 4) - Re-Refinement of Damage Free X-Ray Structure of Bovine Cytochrome C Oxidase at 1.9 Angstrom Resolution
    Other atoms: Cu (6); Zn (2); Fe (4); Mg (2);
  20. 7y52 (Na: 2) - Crystal Structure of Peptidyl-Trna Hydrolase From Enterococcus Faecium
  21. 7y6i (Na: 4) - Cryo-Em Structure of Human Sodium-Chloride Cotransporter
    Other atoms: Cl (4);
  22. 7y7w (Na: 2) - Cryo-Em Structure of Human Gaba Transporter GAT1 Bound with Gaba in Nacl Solution in An Inward-Occluded State at 2.4 Angstrom
    Other atoms: Cl (1);
  23. 7y7y (Na: 2) - Cryo-Em Structure of Human Gaba Transporter GAT1 Bound with Nipecotic Acid in Nacl Solution in An Inward-Occluded State at 2.4 Angstrom
    Other atoms: Cl (1);
  24. 7y8s (Na: 3) - Crystal Structure of Sdscam FNIII1-3 Domains, Isoform BETA2V6
  25. 7y94 (Na: 2) - Crystal Structure of Escherichia Coli Adenine Phosphoribosyltransferase (Aprt) in Complex with Adenine
    Other atoms: Cl (5);
  26. 7y95 (Na: 8) - Crystal Structure of Sdscam IG1 Domain, Isoform BETA6V2
  27. 7y9h (Na: 3) - Crystal Structure of Diterpene Synthase Vena From Streptomyces Venezuelae Atcc 15439
  28. 7ya4 (Na: 1) - Formate Dehydrogenase From Novosphingobium Sp. AP12 with Nad and Azide
  29. 7ya9 (Na: 1) - FIS1 (Mitochondrial Fission 1 Protein)
  30. 7ybg (Na: 2) - Crystal Structure of the Sars-Cov-2 Papain-Like Protease (C111S Mutant)
    Other atoms: Cl (1); Zn (1);
  31. 7yf7 (Na: 135) - uc(Nmr) Solution Structures of the Dna Minidumbbell Formed By Two Atttt Repeats
  32. 7ygi (Na: 2) - Crystal Structure of P53 Dbd Domain in Complex with Azurin
    Other atoms: Zn (2); K (2);
  33. 7ykb (Na: 1) - Neutron Structure of Pcya D105N Mutant Complexed with Biliverdin at Room Temperature
  34. 7ymg (Na: 2) - Crystal Structure of BRD4 Bromodomain 1 (BD1) in Complex with 2-({3- Ethyl-[1,2,4]Triazolo[4,3-B]Pyridazin-6-Yl}Amino)-3-(1H-Indol-3-Yl) Propan-1-Ol
  35. 7yne (Na: 2) - Crystal Structure of Fragmin Domain-1 (1-160) in Complex with G-Form Actin
    Other atoms: Ca (12);
  36. 7ynh (Na: 2) - Catalytic Intermediate of Copper Amine Oxidase Determined By Serial Femtosecond X-Ray Crystallography Using A Single-Flow Liquid Jet System
    Other atoms: Cu (2);
  37. 7ynu (Na: 1) - Crystal Structure of Hen Egg White Lysozyme Introduced with O-(2- Nitrobenzyl)-L-Tyrosine
    Other atoms: Cl (5);
  38. 7ynv (Na: 1) - Crystal Structure of Photolysed Hen Egg White Lysozyme Introduced with O-(2-Nitrobenzyl)-L-Tyrosine
    Other atoms: Cl (5);
  39. 7ynx (Na: 12) - Crystal Structure of PIRH2 Bound to Poly-Ala Peptide
    Other atoms: Zn (16);
  40. 7ypy (Na: 2) - Bovine Heart Cytochrome C Oxidase in Fully Oxidized State at 1.5 Angstrom Resolution
    Other atoms: Mg (2); Zn (2); Cu (6); Fe (4);
Page generated: Sun Dec 15 11:42:36 2024

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