Sodium in PDB 7syw: Structure of the Wt Ires EIF5B-Containing 48S Initiation Complex, Closed Conformation. Structure 15(Wt)

The structure of Structure of the Wt Ires EIF5B-Containing 48S Initiation Complex, Closed Conformation. Structure 15(Wt) also contains other interesting chemical elements:

Zinc	(Zn)	1 atom
Magnesium	(Mg)	1 atom

The binding sites of Sodium atom in the Structure of the Wt Ires EIF5B-Containing 48S Initiation Complex, Closed Conformation. Structure 15(Wt) (pdb code 7syw). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of the Wt Ires EIF5B-Containing 48S Initiation Complex, Closed Conformation. Structure 15(Wt), PDB code: 7syw:

Sodium binding site 1 out of 1 in the Structure of the Wt Ires EIF5B-Containing 48S Initiation Complex, Closed Conformation. Structure 15(Wt)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of the Wt Ires EIF5B-Containing 48S Initiation Complex, Closed Conformation. Structure 15(Wt) within 5.0Å range: probe atom residue distance (Å) B Occ x:Na1303 b:21.8 occ:1.00 O3G x:GTP1301 2.4 16.0 1.0 O2A x:GTP1301 2.4 18.2 1.0 O3B x:GTP1301 2.5 18.4 1.0 O x:GLY661 2.7 72.9 1.0 OD1 x:ASP639 2.8 74.7 1.0 PG x:GTP1301 3.1 17.7 1.0 PA x:GTP1301 3.5 15.5 1.0 O3A x:GTP1301 3.6 17.6 1.0 PB x:GTP1301 3.6 16.5 1.0 C x:GLY661 3.9 72.9 1.0 O1G x:GTP1301 3.9 15.2 1.0 C5' x:GTP1301 4.0 17.1 1.0 CG x:ASP639 4.0 74.7 1.0 NE2 x:GLN655 4.2 73.5 1.0 CA x:ASP639 4.3 74.7 1.0 O2B x:GTP1301 4.3 13.0 1.0 O5' x:GTP1301 4.3 16.9 1.0 O2G x:GTP1301 4.4 20.2 1.0 N x:ASP639 4.4 74.7 1.0 MG x:MG1302 4.4 18.1 1.0 CA x:GLY661 4.6 72.9 1.0 CB x:ASP639 4.8 74.7 1.0 O1A x:GTP1301 4.8 17.6 1.0 O1B x:GTP1301 4.9 16.3 1.0 N x:ILE662 4.9 65.8 1.0 OD2 x:ASP639 5.0 74.7 1.0

Z.P.Brown, I.S.Abaeva, S.De, C.U.T.Hellen, T.V.Pestova, J.Frank. Comprehensive Structural Overview of the Hcv Ires-Mediated Translation Initiation Pathway To Be Published.