Sodium in PDB 7t3s: Crystal Structure of Mouse Cadherin-23 EC8-9

The structure of Crystal Structure of Mouse Cadherin-23 EC8-9, PDB code: 7t3s was solved by J.S.Sandhu, P.De La Torre, M.Sotomayor, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.21 / 2.97
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	41.827, 56.194, 93.853, 90, 90, 90
R / Rfree (%)	21.4 / 29.9

The structure of Crystal Structure of Mouse Cadherin-23 EC8-9 also contains other interesting chemical elements:

Calcium

(Ca)

3 atoms

The binding sites of Sodium atom in the Crystal Structure of Mouse Cadherin-23 EC8-9 (pdb code 7t3s). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Mouse Cadherin-23 EC8-9, PDB code: 7t3s:

Sodium binding site 1 out of 1 in the Crystal Structure of Mouse Cadherin-23 EC8-9


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Mouse Cadherin-23 EC8-9 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1004 b:44.5 occ:1.00 OD2 A:ASP862 2.3 47.0 1.0 OD1 A:ASP818 2.3 57.8 1.0 OE1 A:GLU820 2.5 55.8 1.0 OE1 A:GLU766 2.9 47.2 1.0 OD1 A:ASP862 3.0 46.9 1.0 CG A:ASP862 3.0 47.5 1.0 CG A:ASP818 3.4 54.2 1.0 OD1 A:ASN863 3.4 59.4 1.0 CD A:GLU820 3.7 55.9 1.0 CD A:GLU766 3.8 47.1 1.0 CA A:CA1003 3.8 43.3 1.0 CE A:MET767 3.9 68.2 1.0 CB A:GLU820 4.0 56.9 1.0 OD2 A:ASP818 4.0 54.3 1.0 OE2 A:GLU766 4.1 46.4 1.0 N A:GLU820 4.1 56.0 1.0 N A:ARG819 4.2 52.0 1.0 CG A:ASN863 4.2 56.7 1.0 CG A:GLU820 4.3 57.3 1.0 CA A:ASP818 4.4 51.2 1.0 CB A:ASP818 4.4 52.7 1.0 CB A:ASP862 4.4 47.8 1.0 ND2 A:ASN863 4.5 57.3 1.0 C A:ASP818 4.6 51.6 1.0 OE2 A:GLU820 4.6 52.9 1.0 CA A:GLU820 4.7 57.2 1.0 OD1 A:ASP895 4.9 48.5 1.0

J.S.Sandhu, P.De La Torre, M.Sotomayor. Crystal Structure of Mouse Cadherin-23 EC8-9 To Be Published.