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Sodium in PDB, part 236 (files: 9401-9440), PDB 7am5-7baz

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 9401-9440 (PDB 7am5-7baz).
  1. 7am5 (Na: 2) - Crystal Structure of Peptiligase Mutant - L217H/M222P/A225N
  2. 7am8 (Na: 2) - Crystal Structure of Omniligase Mutant W189F
    Other atoms: Cl (1);
  3. 7amd (Na: 2) - In Situ Assembly of Choline Acetyltransferase Ligands By A Hydrothiolation Reaction Reveals Key Determinants For Inhibitor Design
  4. 7ap3 (Na: 2) - Crystal Structure of E. Coli Tyrosyl-Trna Synthetase in Complex with TYRS7HMDDA
  5. 7app (Na: 3) - Structure of Lipase Tl From Capillary Grown Crystal in the Presence of Agarose
  6. 7apy (Na: 2) - Pseudomonas Stutzeri Nitrous Oxide Reductase Mutant, D576A
    Other atoms: Cu (12); Cl (3); Ca (2); K (2);
  7. 7aq0 (Na: 2) - Pseudomonas Stutzeri Nitrous Oxide Reductase Mutant, D576A/S550A
    Other atoms: Ca (2); K (2); Cu (12); Cl (2);
  8. 7aq2 (Na: 2) - Pseudomonas Stutzeri Nitrous Oxide Reductase Mutant, H583A
    Other atoms: Ca (1); K (1); Cu (6); Cl (3); Zn (2);
  9. 7aq3 (Na: 2) - Pseudomonas Stutzeri Nitrous Oxide Reductase Mutant, H583D
    Other atoms: K (1); Ca (1); Zn (2); Cl (2); Cu (8);
  10. 7aq4 (Na: 2) - Pseudomonas Stutzeri Nitrous Oxide Reductase Mutant, H583E
    Other atoms: Cu (8); Cl (2); Zn (2); Ca (2); K (1);
  11. 7aq5 (Na: 2) - Pseudomonas Stutzeri Nitrous Oxide Reductase Mutant, H583N
    Other atoms: Zn (2); Cl (3); Cu (8); K (1); Ca (2);
  12. 7aq6 (Na: 2) - Pseudomonas Stutzeri Nitrous Oxide Reductase Mutant, H583F
    Other atoms: Cu (12); Cl (2); Ca (2); K (2);
  13. 7aq7 (Na: 2) - Pseudomonas Stutzeri Nitrous Oxide Reductase Mutant, H583Y
    Other atoms: Cl (3); Cu (12); K (2); Ca (2);
  14. 7aq8 (Na: 2) - Pseudomonas Stutzeri Nitrous Oxide Reductase Mutant, H583Y/D576A
    Other atoms: K (2); Ca (2); Zn (2); Cl (2); Cu (8);
  15. 7aq9 (Na: 2) - Pseudomonas Stutzeri Nitrous Oxide Reductase Mutant, H583W
    Other atoms: Ca (1); K (1); Cu (6); Cl (3); Zn (2);
  16. 7aqa (Na: 1) - Pseudomonas Stutzeri Nitrous Oxide Reductase Mutant, H382A
    Other atoms: Ca (2); K (2); Cu (11); Cl (3);
  17. 7aqx (Na: 2) - Co-Crystal Structure of Variant Surface Glycoprotein VSG2 in Complex with Nanobody VSG2(NB9)
  18. 7aqz (Na: 2) - Co-Crystal Structure of Variant Surface Glycoprotein VSG2 in Complex with Nanobody VSG2(NB14)
  19. 7aro (Na: 1) - Crystal Structure of the Non-Ribose Partial Agonist LUF5833 Bound to the Adenosine A2A Receptor
  20. 7asj (Na: 1) - Crystal Structure For the Complex of Human Carbonic Anhydrase II and 3-(3-Methyl-3-Phenethylureido)Benzenesulfonamide
    Other atoms: Zn (1);
  21. 7asq (Na: 1) - Orotidine 5'-Monophosphate Decarboxylase-Domain of Human Umps in Complex with the Reaction Product Ump at 0.95 Angstrom Resolution
  22. 7at6 (Na: 5) - Structure of Thaumatin Collected By Femtosecond Serial Crystallography on A Coc Membrane
  23. 7at9 (Na: 2) - Structure of Protein Kinase CK2 Catalytic Subunit (CSNK2A2 Gene Product) in Complex with the Atp-Competitive Inhibitor MB002 and the Alphad-Pocket Ligand 3,4-Dichlorophenethylamine
    Other atoms: Br (8); Cl (6);
  24. 7auw (Na: 2) - Inhibitory Complex of Human Meprin Beta with Mouse Fetuin-B.
    Other atoms: Zn (2);
  25. 7avq (Na: 1) - Crystal Structure of Haspin in Complex with Disubstituted Imidazo[1,2- B]Pyridazine Inhibitor (Compound 12)
  26. 7awe (Na: 13) - Human Immunoproteasome 20S Particle in Complex with [(1R)-2-(1- Benzofuran-3-Yl)-1-{[(1S,2R,4R)-7-Oxabicyclo[2.2.1]Heptan-2- Yl]Formamido}Ethyl]Boronic Acid
  27. 7awh (Na: 1) - Crystal Structure of Human Butyrylcholinesterase in Complex with Tert- Butyl 3-(((2-((1-(Benzenesulfonyl)-1H-Indol-4-Yl)Oxy)Ethyl)Amino) Methyl)Piperidine-1-Carboxylate
  28. 7awm (Na: 3) - Structure of the Thermostabilized EAAT1 Cryst Mutant in Complex with L-Asp, Three Sodium Ions and the Allosteric Inhibitor UCPH101
    Other atoms: Ba (1);
  29. 7awq (Na: 2) - Structure of the Thermostabilized EAAT1 Cryst-E386Q Mutant in Complex with L-Asp, Sodium Ions and the Allosteric Inhibitor UCPH101
    Other atoms: Ba (1);
  30. 7ax2 (Na: 1) - Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta, Form B
    Other atoms: Si (2); W (23);
  31. 7b02 (Na: 1) - Thioredoxin Glutathione Reductase From Schistosoma Mansoni in Complex with 4-Hydroxy-7-Methyl-1,8-Naphthyridine-3-Carboxylic Acid
    Other atoms: K (1); Cl (1);
  32. 7b12 (Na: 6) - Human Immunoproteasome 20S Particle in Complex with [2-(3- Ethylphenyl)-1-[(2S)-3-Phenyl-2-[(Pyrazin-2-Yl) Formamido]Propanamido]Ethyl]Boronic Acid
  33. 7b1k (Na: 2) - Crystal Structure of Phosphatidyl Serine Synthase (Pss) in the Closed Conformation with Bound Citrate.
    Other atoms: Mg (2); Ca (2); Cl (4);
  34. 7b1l (Na: 2) - Crystal Structure of Phosphatidyl Serine Synthase (Pss) in the Closed Conformation with Bound Citrate.
    Other atoms: Cl (6); Mg (2); Ca (2);
  35. 7b2c (Na: 5) - Crystal Structure of the Ethyl-Coenzyme M Reductase From Candidatus Ethanoperedens Thermophilum Gassed with Xenon
    Other atoms: Mg (1); K (17); Ni (2); Xe (16); Cl (5);
  36. 7b3e (Na: 1) - Crystal Structure of Myricetin Covalently Bound to the Main Protease (3CLPRO/Mpro) of Sars-Cov-2
    Other atoms: Cl (1);
  37. 7b4w (Na: 2) - Broadly Neutralizing Darpin Bnd.3 in Complex with the Hiv-1 Envelope Variable Loop 3 Crown Mimetic Peptide V3-if (BG505)
    Other atoms: Ca (2);
  38. 7b7n (Na: 10) - Human Herpesvirus-8 Gh/Gl in Complex with EPHA2
    Other atoms: Cl (4);
  39. 7b9j (Na: 5) - Lysozyme Crystallized in the Presence of the Hydrated Deep Eutectic Solvent Choline Chloride-Urea 1:2
    Other atoms: Cl (13);
  40. 7baz (Na: 5) - Lysozyme Crystallized in the Presence of the Hydrated Deep Eutectic Solvent Choline Chloride-Glycerol 1:2
    Other atoms: Cl (13);
Page generated: Fri Dec 24 09:55:18 2021

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