Sodium in PDB 7ax2: Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta, Form B

Protein crystallography data

The structure of Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta, Form B, PDB code: 7ax2 was solved by B.Mylemans, L.Vandebroek, T.N.Parac-Vogt, A.R.D.Voet, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.21 / 2.10
Space group I 41 2 2
Cell size a, b, c (Å), α, β, γ (°) 133.517, 133.517, 70.093, 90, 90, 90
R / Rfree (%) 17.8 / 20.6

Other elements in 7ax2:

The structure of Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta, Form B also contains other interesting chemical elements:

Silicon (Si) 2 atoms
Tungsten (W) 23 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta, Form B (pdb code 7ax2). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta, Form B, PDB code: 7ax2:

Sodium binding site 1 out of 1 in 7ax2

Go back to Sodium Binding Sites List in 7ax2
Sodium binding site 1 out of 1 in the Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta, Form B


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta, Form B within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na403

b:21.1
occ:0.50
O18 A:S5T402 2.2 26.8 0.5
O3E A:S5T402 2.3 26.8 0.5
O16E A:S5T402 2.4 26.8 0.5
O2E A:S5T402 2.4 26.8 0.5
O A:ARG247 2.7 27.8 1.0
O4 A:S5T402 3.5 26.8 0.5
C A:ARG247 3.7 25.6 1.0
W7 A:S5T402 4.0 26.8 0.5
W2E A:S5T402 4.0 26.8 0.5
W1 A:S5T402 4.0 26.8 0.5
W5E A:S5T402 4.1 26.8 0.5
O7E A:S5T402 4.1 26.8 0.5
O20 A:S5T402 4.3 26.8 0.5
CA A:PHE248 4.4 26.4 1.0
N A:ARG247 4.5 22.4 1.0
N A:PHE248 4.5 26.4 1.0
O8 A:S5T402 4.5 26.8 0.5
SI1 A:S5T402 4.5 26.8 0.5
CA A:ARG247 4.6 28.8 1.0
O A:GLY280 4.6 31.7 1.0
O10E A:S5T402 4.7 26.8 0.5
O1E A:S5T402 4.7 26.8 0.5
O15E A:S5T402 4.7 26.8 0.5
O6 A:S5T402 4.8 26.8 0.5
O7 A:S5T402 4.8 26.8 0.5
O12 A:S5T402 4.9 26.8 0.5
CB A:TRP246 4.9 24.9 1.0
O19E A:S5T402 4.9 26.8 0.5
O21 A:S5T402 4.9 26.8 0.5
CB A:ARG247 4.9 26.6 1.0

Reference:

B.Mylemans, L.Vandebroek, T.N.Parac-Vogt, A.R.D.Voet. Crystal Structure of the Computationally Designed Scone-E Protein Co-Crystallized with Sta, Form B To Be Published.
Page generated: Mon Jan 25 15:51:20 2021

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