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Sodium in PDB, part 227 (files: 9041-9080), PDB 6vyd-6wk2

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 9041-9080 (PDB 6vyd-6wk2).
  1. 6vyd (Na: 2) - Terpenoid Cyclase Fggs in Complex with Mg, Inorganic Pyrophosphate, and Benzyltriethylammonium Cation
    Other atoms: Mg (6); Cl (3);
  2. 6vza (Na: 2) - Crystal Structure of Cytochrome P450 NASF5053 Q65I-A86G Mutant Variant From Streptomyces Sp. Nrrl F-5053 in the Cyclo-L-Trp-L-Pro-Bound State
    Other atoms: Fe (1); Ca (1); Cl (1);
  3. 6vzb (Na: 1) - Crystal Structure of Cytochrome P450 NASF5053 S284A-V288A Mutant Variant From Streptomyces Sp. Nrrl F-5053 in the Cyclo-L-Trp-L-Pro- Bound State
    Other atoms: Fe (1);
  4. 6w0r (Na: 1) - Human 8-Oxoguanine Glycosylase Interrogating Fully Intrahelical Undamaged Dna
  5. 6w0s (Na: 2) - Crystal Structure of Substrate Free Cytochrome P450 NASF5053 From Streptomyces Sp. Nrrl F-5053
    Other atoms: Br (4); Fe (2); Cl (6);
  6. 6w1i (Na: 8) - Re-Interpretation of Ppgpp (G4P) Electron Density in the Deposited Crystal Structure of Xanthine Phosphoribosyltransferase (Xprt) (1Y0B).
  7. 6w26 (Na: 2) - Terpenoid Cyclase Fggs in Complex with Mg, Inorganic Pyrophosphate, and Imidazole
    Other atoms: Mg (6);
  8. 6w2m (Na: 2) - Abortive Ternary Complex Crystal Structure of Dna Polymerase Beta with 8OG-Dc Base Pair at the Primer Terminus and Flipped Out Da
    Other atoms: Mg (2); Cl (2);
  9. 6w3l (Na: 2) - APE1 Exonuclease Substrate Complex Wild-Type
    Other atoms: Ca (1);
  10. 6w3o (Na: 3) - Crystal Structure of Ligand-Binding Domain of Campylobacter Jejuni Chemoreceptor TLP3 in Complex with 4-Methylisoleucine
    Other atoms: Cl (1);
  11. 6w3p (Na: 2) - Crystal Structure of Ligand-Binding Domain of Campylobacter Jejuni Chemoreceptor TLP3 in Complex with Beta-Methylnorleucine
    Other atoms: Cl (5);
  12. 6w3q (Na: 1) - APE1 Exonuclease Substrate Complex L104R
    Other atoms: Ca (1);
  13. 6w3r (Na: 3) - Crystal Structure of Ligand-Binding Domain of Campylobacter Jejuni Chemoreceptor TLP3 in Complex with 3-Methylisoleucine
    Other atoms: Cl (3);
  14. 6w3u (Na: 1) - APE1 Exonuclease Substrate Complex R237C
    Other atoms: Ca (1); Cl (1);
  15. 6w3v (Na: 1) - Crystal Structure of Ligand-Binding Domain of Campylobacter Jejuni Chemoreceptor TLP3 in Complex with L-Phenylalanine
    Other atoms: Cl (2);
  16. 6w4u (Na: 2) - Crystal Structure of Triosephosphate Isomerase From Stenotrophomonas Maltophilia K279A
    Other atoms: Cl (2);
  17. 6w75 (Na: 7) - 1.95 Angstrom Resolution Crystal Structure of NSP10 - NSP16 Complex From Sars-Cov-2
    Other atoms: Zn (4);
  18. 6w7g (Na: 1) - Structure of Eed Bound to Inhibitor 1056
    Other atoms: F (2);
  19. 6w7p (Na: 1) - Crystal Structure Analysis of Space-Grown Lysozyme - Ground Experiment
    Other atoms: Cl (4);
  20. 6w9p (Na: 1) - TEL26 Parallel Four-Quartet G-Quadruplex with K+
    Other atoms: K (3);
  21. 6wb7 (Na: 4) - Acarbose Kinase Acbk As A Complex with Acarbose and Amp-Pnp
    Other atoms: Mn (5);
  22. 6wdu (Na: 2) - The External Aldimine Form of the Salmonella Thypi Wild-Type Tryptophan Synthase in Open Conformation Showing Multiple Side Chain Conformations For the Residue Beta Q114 and Sodium Ion at the Metal Coordination Site. One of the Beta-Q114 Rotamer Conformations Allows A Hydrogen Bond to Form with the Plp Oxygen at the Position 3 in the Ring.
  23. 6we5 (Na: 3) - Crystal Structure of An Inorganic Pyrophosphatase From Chlamydia Trachomatis D/Uw-3/Cx
  24. 6wea (Na: 2) - Yth Domain of Human YTHDC1 with A 10MER Oligo Containing N6MA
  25. 6wej (Na: 1) - Structure of Cgmp-Unbound Wt Tax-4 Reconstituted in Lipid Nanodiscs
  26. 6wel (Na: 1) - Structure of Cgmp-Unbound F403V/V407A Mutant Tax-4 Reconstituted in Lipid Nanodiscs
  27. 6wgo (Na: 1) - The Interaction of Dichlorido(3-(Anthracen-9-Ylmethyl)-1- Methylimidazol-2-Ylidene)(ETA6-P-Cymene)Ruthenium(II) with Hewl After 1 Week
    Other atoms: Ru (1); Cl (2);
  28. 6whn (Na: 6) - Histone Deacetylases Complex with Peptide Macrocycles
    Other atoms: Zn (3);
  29. 6who (Na: 6) - Histone Deacetylases Complex with Peptide Macrocycles
    Other atoms: Zn (3);
  30. 6whq (Na: 6) - Histone Deacetylases Complex with Peptide Macrocycles
    Other atoms: Zn (3);
  31. 6whz (Na: 5) - Histone Deacetylases Complex with Peptide Macrocycles
    Other atoms: Zn (3);
  32. 6wi3 (Na: 6) - Histone Deacetylases Complex with Peptide Macrocycles
    Other atoms: Zn (3);
  33. 6wic (Na: 1) - Pre-Catalytic Quaternary Complex of Human Polymerase Mu on A Complementary Dna Double-Strand Break Substrate
    Other atoms: Mg (2); K (1); Cl (1);
  34. 6wid (Na: 1) - Nucleotide Incorporation Intermediate Into Quaternary Complex of Human Polymerase Mu on A Complementary Dna Double-Strand Break Substrate
    Other atoms: Mg (2); Cl (1);
  35. 6wie (Na: 2) - Post-Catalytic Nicked Complex of Human Polymerase Mu on A Complementary Dna Double-Strand Break Substrate
    Other atoms: Mg (2); Cl (1);
  36. 6wjo (Na: 2) - Crystal Structure of Wild-Type Arginine Repressor From the Pathogenic Bacterium Corynebacterium Pseudotuberculosis Bound to Tyrosine
  37. 6wjt (Na: 2) - 2.0 Angstrom Resolution Crystal Structure of NSP16-NSP10 Heterodimer From Sars-Cov-2 in Complex with S-Adenosyl-L-Homocysteine
    Other atoms: Zn (4);
  38. 6wjz (Na: 2) - Crystal Structure of Human Ribokinase in Complex with Ampcp
    Other atoms: Mg (2);
  39. 6wk0 (Na: 8) - Crystal Structure of Human Ribokinase in Complex with Amppcp and Ribose
  40. 6wk2 (Na: 1) - SETD3 Mutant (N255V) in Complex with An Actin Peptide with HIS73 Replaced with Methionine
Page generated: Fri Dec 24 09:54:37 2021

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