Sodium »
PDB 6w0s-6wn2 »
6w2m »
Sodium in PDB 6w2m: Abortive Ternary Complex Crystal Structure of Dna Polymerase Beta with 8OG-Dc Base Pair at the Primer Terminus and Flipped Out Da
Enzymatic activity of Abortive Ternary Complex Crystal Structure of Dna Polymerase Beta with 8OG-Dc Base Pair at the Primer Terminus and Flipped Out Da
All present enzymatic activity of Abortive Ternary Complex Crystal Structure of Dna Polymerase Beta with 8OG-Dc Base Pair at the Primer Terminus and Flipped Out Da:
2.7.7.7;
2.7.7.7;
Protein crystallography data
The structure of Abortive Ternary Complex Crystal Structure of Dna Polymerase Beta with 8OG-Dc Base Pair at the Primer Terminus and Flipped Out Da, PDB code: 6w2m
was solved by
V.K.Batra,
S.H.Wilson,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 23.93 / 2.00 |
| Space group | P 1 21 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 50.751, 80.462, 55.612, 90.00, 107.75, 90.00 |
| R / Rfree (%) | 19.3 / 23.8 |
Other elements in 6w2m:
The structure of Abortive Ternary Complex Crystal Structure of Dna Polymerase Beta with 8OG-Dc Base Pair at the Primer Terminus and Flipped Out Da also contains other interesting chemical elements:
| Magnesium | (Mg) | 2 atoms |
| Chlorine | (Cl) | 2 atoms |
Sodium Binding Sites:
The binding sites of Sodium atom in the Abortive Ternary Complex Crystal Structure of Dna Polymerase Beta with 8OG-Dc Base Pair at the Primer Terminus and Flipped Out Da
(pdb code 6w2m). This binding sites where shown within
5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Abortive Ternary Complex Crystal Structure of Dna Polymerase Beta with 8OG-Dc Base Pair at the Primer Terminus and Flipped Out Da, PDB code: 6w2m:
Jump to Sodium binding site number: 1; 2;
In total 2 binding sites of Sodium where determined in the Abortive Ternary Complex Crystal Structure of Dna Polymerase Beta with 8OG-Dc Base Pair at the Primer Terminus and Flipped Out Da, PDB code: 6w2m:
Jump to Sodium binding site number: 1; 2;
Sodium binding site 1 out of 2 in 6w2m
Go back to
Sodium Binding Sites List in 6w2m
Sodium binding site 1 out
of 2 in the Abortive Ternary Complex Crystal Structure of Dna Polymerase Beta with 8OG-Dc Base Pair at the Primer Terminus and Flipped Out Da
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Sodium with other atoms in the Na binding
site number 1 of Abortive Ternary Complex Crystal Structure of Dna Polymerase Beta with 8OG-Dc Base Pair at the Primer Terminus and Flipped Out Da within 5.0Å range:
|
Sodium binding site 2 out of 2 in 6w2m
Go back to
Sodium Binding Sites List in 6w2m
Sodium binding site 2 out
of 2 in the Abortive Ternary Complex Crystal Structure of Dna Polymerase Beta with 8OG-Dc Base Pair at the Primer Terminus and Flipped Out Da
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Sodium with other atoms in the Na binding
site number 2 of Abortive Ternary Complex Crystal Structure of Dna Polymerase Beta with 8OG-Dc Base Pair at the Primer Terminus and Flipped Out Da within 5.0Å range:
|
Reference:
V.K.Batra,
S.H.Wilson.
Structure of A Dna Polymerase Abortive Complex with the 8OG:Da Base Pair at the Primer Terminus. Commun Biol V. 3 348 2020.
ISSN: ESSN 2399-3642
PubMed: 32620932
DOI: 10.1038/S42003-020-1080-4
Page generated: Tue Oct 8 14:31:24 2024
ISSN: ESSN 2399-3642
PubMed: 32620932
DOI: 10.1038/S42003-020-1080-4
Last articles
Zn in 9JYWZn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
