Sodium in PDB 6wdu: The External Aldimine Form of the Salmonella Thypi Wild-Type Tryptophan Synthase in Open Conformation Showing Multiple Side Chain Conformations For the Residue Beta Q114 and Sodium Ion at the Metal Coordination Site. One of the Beta-Q114 Rotamer Conformations Allows A Hydrogen Bond to Form with the Plp Oxygen at the Position 3 in the Ring.
Enzymatic activity of The External Aldimine Form of the Salmonella Thypi Wild-Type Tryptophan Synthase in Open Conformation Showing Multiple Side Chain Conformations For the Residue Beta Q114 and Sodium Ion at the Metal Coordination Site. One of the Beta-Q114 Rotamer Conformations Allows A Hydrogen Bond to Form with the Plp Oxygen at the Position 3 in the Ring.
All present enzymatic activity of The External Aldimine Form of the Salmonella Thypi Wild-Type Tryptophan Synthase in Open Conformation Showing Multiple Side Chain Conformations For the Residue Beta Q114 and Sodium Ion at the Metal Coordination Site. One of the Beta-Q114 Rotamer Conformations Allows A Hydrogen Bond to Form with the Plp Oxygen at the Position 3 in the Ring.:
4.2.1.20;
4.2.1.20;
Protein crystallography data
The structure of The External Aldimine Form of the Salmonella Thypi Wild-Type Tryptophan Synthase in Open Conformation Showing Multiple Side Chain Conformations For the Residue Beta Q114 and Sodium Ion at the Metal Coordination Site. One of the Beta-Q114 Rotamer Conformations Allows A Hydrogen Bond to Form with the Plp Oxygen at the Position 3 in the Ring., PDB code: 6wdu
was solved by
E.Hilario,
L.Fan,
M.F.Dunn,
L.J.Mueller,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 36.91 / 1.40 |
| Space group | C 1 2 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 182.655, 59.415, 67.345, 90, 94.89, 90 |
| R / Rfree (%) | 16.2 / 19.5 |
Sodium Binding Sites:
The binding sites of Sodium atom in the The External Aldimine Form of the Salmonella Thypi Wild-Type Tryptophan Synthase in Open Conformation Showing Multiple Side Chain Conformations For the Residue Beta Q114 and Sodium Ion at the Metal Coordination Site. One of the Beta-Q114 Rotamer Conformations Allows A Hydrogen Bond to Form with the Plp Oxygen at the Position 3 in the Ring.
(pdb code 6wdu). This binding sites where shown within
5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the The External Aldimine Form of the Salmonella Thypi Wild-Type Tryptophan Synthase in Open Conformation Showing Multiple Side Chain Conformations For the Residue Beta Q114 and Sodium Ion at the Metal Coordination Site. One of the Beta-Q114 Rotamer Conformations Allows A Hydrogen Bond to Form with the Plp Oxygen at the Position 3 in the Ring., PDB code: 6wdu:
Jump to Sodium binding site number: 1; 2;
In total 2 binding sites of Sodium where determined in the The External Aldimine Form of the Salmonella Thypi Wild-Type Tryptophan Synthase in Open Conformation Showing Multiple Side Chain Conformations For the Residue Beta Q114 and Sodium Ion at the Metal Coordination Site. One of the Beta-Q114 Rotamer Conformations Allows A Hydrogen Bond to Form with the Plp Oxygen at the Position 3 in the Ring., PDB code: 6wdu:
Jump to Sodium binding site number: 1; 2;
Sodium binding site 1 out of 2 in 6wdu
Go back to
Sodium Binding Sites List in 6wdu
Sodium binding site 1 out
of 2 in the The External Aldimine Form of the Salmonella Thypi Wild-Type Tryptophan Synthase in Open Conformation Showing Multiple Side Chain Conformations For the Residue Beta Q114 and Sodium Ion at the Metal Coordination Site. One of the Beta-Q114 Rotamer Conformations Allows A Hydrogen Bond to Form with the Plp Oxygen at the Position 3 in the Ring.
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Sodium with other atoms in the Na binding
site number 1 of The External Aldimine Form of the Salmonella Thypi Wild-Type Tryptophan Synthase in Open Conformation Showing Multiple Side Chain Conformations For the Residue Beta Q114 and Sodium Ion at the Metal Coordination Site. One of the Beta-Q114 Rotamer Conformations Allows A Hydrogen Bond to Form with the Plp Oxygen at the Position 3 in the Ring. within 5.0Å range:
|
Sodium binding site 2 out of 2 in 6wdu
Go back to
Sodium Binding Sites List in 6wdu
Sodium binding site 2 out
of 2 in the The External Aldimine Form of the Salmonella Thypi Wild-Type Tryptophan Synthase in Open Conformation Showing Multiple Side Chain Conformations For the Residue Beta Q114 and Sodium Ion at the Metal Coordination Site. One of the Beta-Q114 Rotamer Conformations Allows A Hydrogen Bond to Form with the Plp Oxygen at the Position 3 in the Ring.
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Sodium with other atoms in the Na binding
site number 2 of The External Aldimine Form of the Salmonella Thypi Wild-Type Tryptophan Synthase in Open Conformation Showing Multiple Side Chain Conformations For the Residue Beta Q114 and Sodium Ion at the Metal Coordination Site. One of the Beta-Q114 Rotamer Conformations Allows A Hydrogen Bond to Form with the Plp Oxygen at the Position 3 in the Ring. within 5.0Å range:
|
Reference:
E.Hilario,
L.Fan,
M.F.Dunn,
L.J.Mueller.
The External Aldimine Form of the Salmonella Thypi Wild-Type Tryptophan Synthase in Open Conformation Showing Multiple Side Chain Conformations For the Residue Beta Q114 and Sodium Ion at the Metal Coordination Site. One of the Beta-Q114 Rotamer Conformations Allows A Hydrogen Bond to Form with the Plp Oxygen at the Position 3 in the Ring. To Be Published.
Page generated: Sat Apr 3 17:51:09 2021
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