Sodium in PDB 6wk0: Crystal Structure of Human Ribokinase in Complex with Amppcp and Ribose
Enzymatic activity of Crystal Structure of Human Ribokinase in Complex with Amppcp and Ribose
All present enzymatic activity of Crystal Structure of Human Ribokinase in Complex with Amppcp and Ribose:
2.7.1.15;
Protein crystallography data
The structure of Crystal Structure of Human Ribokinase in Complex with Amppcp and Ribose, PDB code: 6wk0
was solved by
J.Park,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
51.43 /
2.00
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
52.02,
89.35,
144.7,
90,
98.61,
90
|
R / Rfree (%)
|
19.7 /
23.9
|
Sodium Binding Sites:
The binding sites of Sodium atom in the Crystal Structure of Human Ribokinase in Complex with Amppcp and Ribose
(pdb code 6wk0). This binding sites where shown within
5.0 Angstroms radius around Sodium atom.
In total 8 binding sites of Sodium where determined in the
Crystal Structure of Human Ribokinase in Complex with Amppcp and Ribose, PDB code: 6wk0:
Jump to Sodium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Sodium binding site 1 out
of 8 in 6wk0
Go back to
Sodium Binding Sites List in 6wk0
Sodium binding site 1 out
of 8 in the Crystal Structure of Human Ribokinase in Complex with Amppcp and Ribose
Mono view
Stereo pair view
|
A full contact list of Sodium with other atoms in the Na binding
site number 1 of Crystal Structure of Human Ribokinase in Complex with Amppcp and Ribose within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Na402
b:26.6
occ:1.00
|
O
|
A:SER301
|
2.2
|
24.3
|
1.0
|
O
|
A:HOH559
|
2.3
|
37.1
|
1.0
|
O
|
A:ASP263
|
2.4
|
34.6
|
1.0
|
O
|
A:HOH690
|
2.4
|
26.7
|
1.0
|
O
|
A:ALA304
|
2.4
|
31.6
|
1.0
|
OG
|
A:SER310
|
2.9
|
25.0
|
1.0
|
C
|
A:SER301
|
3.2
|
25.9
|
1.0
|
CB
|
A:SER310
|
3.3
|
26.7
|
1.0
|
C
|
A:ASP263
|
3.6
|
35.6
|
1.0
|
C
|
A:ALA304
|
3.7
|
34.9
|
1.0
|
CA
|
A:VAL302
|
3.8
|
26.8
|
1.0
|
N
|
A:VAL302
|
3.9
|
25.7
|
1.0
|
O
|
A:THR265
|
4.0
|
28.6
|
1.0
|
CB
|
A:ASP263
|
4.2
|
41.3
|
1.0
|
CA
|
A:SER301
|
4.2
|
26.2
|
1.0
|
C
|
A:VAL302
|
4.3
|
28.7
|
1.0
|
N
|
A:ALA304
|
4.3
|
31.4
|
1.0
|
CA
|
A:ASP263
|
4.4
|
39.1
|
1.0
|
CB
|
A:SER301
|
4.4
|
24.7
|
1.0
|
OD1
|
A:ASP263
|
4.5
|
42.5
|
1.0
|
OG
|
A:SER301
|
4.5
|
27.1
|
1.0
|
CG
|
A:ASP263
|
4.5
|
41.7
|
1.0
|
N
|
A:THR264
|
4.5
|
34.1
|
1.0
|
O
|
A:VAL302
|
4.6
|
28.8
|
1.0
|
C
|
A:ALA305
|
4.6
|
38.0
|
1.0
|
CA
|
A:ALA304
|
4.6
|
33.3
|
1.0
|
N
|
A:THR265
|
4.6
|
32.2
|
1.0
|
N
|
A:THR307
|
4.6
|
35.6
|
1.0
|
N
|
A:GLY306
|
4.6
|
39.3
|
1.0
|
N
|
A:ALA305
|
4.7
|
36.5
|
1.0
|
CA
|
A:THR264
|
4.7
|
32.6
|
1.0
|
C
|
A:THR264
|
4.7
|
31.4
|
1.0
|
CA
|
A:ALA305
|
4.7
|
38.5
|
1.0
|
N
|
A:ASP263
|
4.8
|
39.4
|
1.0
|
CA
|
A:SER310
|
4.8
|
27.5
|
1.0
|
N
|
A:GLN303
|
4.8
|
28.4
|
1.0
|
O
|
A:ALA305
|
4.9
|
35.8
|
1.0
|
O
|
A:THR307
|
5.0
|
29.2
|
1.0
|
|
Sodium binding site 2 out
of 8 in 6wk0
Go back to
Sodium Binding Sites List in 6wk0
Sodium binding site 2 out
of 8 in the Crystal Structure of Human Ribokinase in Complex with Amppcp and Ribose
Mono view
Stereo pair view
|
A full contact list of Sodium with other atoms in the Na binding
site number 2 of Crystal Structure of Human Ribokinase in Complex with Amppcp and Ribose within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Na403
b:29.7
occ:1.00
|
O
|
A:HOH601
|
2.3
|
23.5
|
1.0
|
O
|
A:HOH620
|
2.4
|
21.2
|
1.0
|
O
|
A:HOH539
|
2.5
|
21.5
|
1.0
|
O1B
|
A:ACP401
|
2.5
|
27.1
|
1.0
|
O
|
A:HOH768
|
2.5
|
23.5
|
1.0
|
O
|
A:HOH566
|
2.6
|
41.0
|
1.0
|
NZ
|
A:LYS54
|
3.9
|
27.0
|
1.0
|
CA
|
A:GLY268
|
3.9
|
24.1
|
1.0
|
PB
|
A:ACP401
|
4.0
|
36.1
|
1.0
|
O3G
|
A:ACP401
|
4.1
|
40.3
|
1.0
|
OE2
|
A:GLU202
|
4.2
|
27.6
|
1.0
|
ND2
|
A:ASN199
|
4.2
|
25.5
|
1.0
|
OD1
|
A:ASP269
|
4.3
|
21.7
|
1.0
|
C
|
A:GLY268
|
4.3
|
22.0
|
1.0
|
O
|
A:HOH695
|
4.3
|
39.0
|
1.0
|
OD1
|
A:ASN177
|
4.4
|
21.3
|
1.0
|
ND2
|
A:ASN177
|
4.4
|
19.0
|
1.0
|
O
|
A:HOH537
|
4.5
|
29.1
|
1.0
|
N
|
A:ASP269
|
4.5
|
21.9
|
1.0
|
CB
|
A:ALA179
|
4.5
|
25.7
|
1.0
|
O2B
|
A:ACP401
|
4.6
|
28.3
|
1.0
|
OE1
|
A:GLU202
|
4.6
|
22.8
|
1.0
|
N
|
A:GLY268
|
4.7
|
23.6
|
1.0
|
O3A
|
A:ACP401
|
4.7
|
34.4
|
1.0
|
CG
|
A:ASN177
|
4.8
|
19.8
|
1.0
|
CD
|
A:GLU202
|
4.8
|
25.3
|
1.0
|
O
|
A:GLY268
|
4.9
|
22.3
|
1.0
|
CG
|
A:ASP269
|
5.0
|
21.9
|
1.0
|
|
Sodium binding site 3 out
of 8 in 6wk0
Go back to
Sodium Binding Sites List in 6wk0
Sodium binding site 3 out
of 8 in the Crystal Structure of Human Ribokinase in Complex with Amppcp and Ribose
Mono view
Stereo pair view
|
A full contact list of Sodium with other atoms in the Na binding
site number 3 of Crystal Structure of Human Ribokinase in Complex with Amppcp and Ribose within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Na403
b:26.2
occ:1.00
|
O
|
B:SER301
|
2.4
|
26.4
|
1.0
|
O
|
B:ASP263
|
2.5
|
31.7
|
1.0
|
O
|
B:HOH647
|
2.5
|
29.4
|
1.0
|
O
|
B:ALA304
|
2.5
|
31.4
|
1.0
|
OG
|
B:SER310
|
2.7
|
26.0
|
1.0
|
O
|
B:GLY306
|
2.7
|
33.3
|
1.0
|
CB
|
B:SER310
|
3.2
|
28.7
|
1.0
|
C
|
B:SER301
|
3.4
|
27.1
|
1.0
|
C
|
B:ASP263
|
3.7
|
32.0
|
1.0
|
C
|
B:ALA304
|
3.8
|
33.5
|
1.0
|
O
|
B:THR265
|
3.9
|
25.0
|
1.0
|
C
|
B:GLY306
|
3.9
|
32.3
|
1.0
|
CA
|
B:VAL302
|
4.0
|
28.3
|
1.0
|
N
|
B:VAL302
|
4.1
|
26.5
|
1.0
|
CB
|
B:ASP263
|
4.2
|
35.3
|
1.0
|
C
|
B:ALA305
|
4.4
|
36.6
|
1.0
|
N
|
B:GLY306
|
4.4
|
36.1
|
1.0
|
CA
|
B:SER301
|
4.4
|
25.7
|
1.0
|
C
|
B:VAL302
|
4.4
|
30.5
|
1.0
|
CA
|
B:ASP263
|
4.4
|
34.7
|
1.0
|
CG
|
B:ASP263
|
4.5
|
36.4
|
1.0
|
N
|
B:ALA304
|
4.5
|
32.1
|
1.0
|
CB
|
B:SER301
|
4.5
|
25.2
|
1.0
|
O
|
B:ALA305
|
4.5
|
36.2
|
1.0
|
OG
|
B:SER301
|
4.6
|
24.7
|
1.0
|
OD1
|
B:ASP263
|
4.6
|
36.4
|
1.0
|
N
|
B:ALA305
|
4.7
|
34.3
|
1.0
|
N
|
B:THR264
|
4.7
|
30.3
|
1.0
|
CA
|
B:ALA304
|
4.7
|
33.9
|
1.0
|
CA
|
B:SER310
|
4.7
|
29.7
|
1.0
|
O
|
B:THR307
|
4.7
|
30.0
|
1.0
|
CA
|
B:GLY306
|
4.7
|
35.8
|
1.0
|
O
|
B:VAL302
|
4.7
|
31.9
|
1.0
|
N
|
B:THR265
|
4.8
|
27.6
|
1.0
|
CA
|
B:THR264
|
4.8
|
29.5
|
1.0
|
CA
|
B:ALA305
|
4.8
|
35.9
|
1.0
|
C
|
B:THR264
|
4.8
|
28.6
|
1.0
|
N
|
B:THR307
|
4.9
|
32.2
|
1.0
|
N
|
B:ASP263
|
4.9
|
35.3
|
1.0
|
|
Sodium binding site 4 out
of 8 in 6wk0
Go back to
Sodium Binding Sites List in 6wk0
Sodium binding site 4 out
of 8 in the Crystal Structure of Human Ribokinase in Complex with Amppcp and Ribose
Mono view
Stereo pair view
|
A full contact list of Sodium with other atoms in the Na binding
site number 4 of Crystal Structure of Human Ribokinase in Complex with Amppcp and Ribose within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Na404
b:48.9
occ:1.00
|
O
|
B:HOH532
|
2.1
|
33.3
|
1.0
|
O
|
B:HOH501
|
2.1
|
33.8
|
1.0
|
O
|
B:HOH583
|
2.2
|
30.8
|
1.0
|
O
|
B:HOH577
|
2.5
|
24.8
|
1.0
|
O
|
B:HOH679
|
2.5
|
63.0
|
1.0
|
O
|
B:HOH576
|
2.6
|
23.6
|
1.0
|
O1B
|
B:ACP402
|
3.0
|
37.8
|
0.5
|
O
|
B:HOH502
|
3.5
|
27.5
|
0.5
|
NZ
|
B:LYS54
|
3.9
|
29.9
|
1.0
|
OE2
|
B:GLU202
|
4.1
|
30.8
|
1.0
|
OD1
|
B:ASP269
|
4.1
|
26.1
|
1.0
|
CA
|
B:GLY268
|
4.1
|
23.5
|
1.0
|
O2B
|
B:ACP402
|
4.2
|
31.1
|
0.5
|
ND2
|
B:ASN199
|
4.2
|
31.0
|
1.0
|
PB
|
B:ACP402
|
4.3
|
38.6
|
0.5
|
OD1
|
B:ASN177
|
4.3
|
27.0
|
1.0
|
O5
|
B:RIB401
|
4.3
|
23.2
|
1.0
|
C
|
B:GLY268
|
4.4
|
23.7
|
1.0
|
O2B
|
B:ACP402
|
4.4
|
32.9
|
0.5
|
ND2
|
B:ASN177
|
4.4
|
25.2
|
1.0
|
O3G
|
B:ACP402
|
4.4
|
36.4
|
0.5
|
CB
|
B:ALA179
|
4.4
|
25.8
|
1.0
|
O
|
B:HOH681
|
4.4
|
35.5
|
1.0
|
N
|
B:ASP269
|
4.5
|
24.0
|
1.0
|
OE1
|
B:GLU202
|
4.5
|
28.4
|
1.0
|
O1B
|
B:ACP402
|
4.7
|
33.5
|
0.5
|
CD
|
B:GLU202
|
4.7
|
29.7
|
1.0
|
CG
|
B:ASN177
|
4.8
|
26.4
|
1.0
|
CG
|
B:ASP269
|
4.8
|
24.9
|
1.0
|
N
|
B:GLY268
|
4.8
|
24.6
|
1.0
|
CE
|
B:LYS54
|
4.9
|
27.2
|
1.0
|
O2A
|
B:ACP402
|
4.9
|
30.0
|
0.5
|
O
|
B:GLY268
|
4.9
|
24.6
|
1.0
|
CD
|
B:LYS54
|
4.9
|
26.7
|
1.0
|
|
Sodium binding site 5 out
of 8 in 6wk0
Go back to
Sodium Binding Sites List in 6wk0
Sodium binding site 5 out
of 8 in the Crystal Structure of Human Ribokinase in Complex with Amppcp and Ribose
Mono view
Stereo pair view
|
A full contact list of Sodium with other atoms in the Na binding
site number 5 of Crystal Structure of Human Ribokinase in Complex with Amppcp and Ribose within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Na403
b:30.9
occ:1.00
|
O
|
C:SER301
|
2.5
|
31.0
|
1.0
|
O
|
C:ASP263
|
2.5
|
35.8
|
1.0
|
O
|
C:GLY306
|
2.5
|
38.9
|
1.0
|
O
|
C:HOH607
|
2.5
|
28.4
|
1.0
|
O
|
C:ALA304
|
2.6
|
46.1
|
1.0
|
OG
|
C:SER310
|
2.8
|
33.0
|
1.0
|
CB
|
C:SER310
|
3.3
|
35.8
|
1.0
|
C
|
C:SER301
|
3.4
|
30.6
|
1.0
|
C
|
C:ASP263
|
3.7
|
36.7
|
1.0
|
C
|
C:GLY306
|
3.8
|
40.9
|
1.0
|
O
|
C:THR265
|
3.8
|
32.0
|
1.0
|
C
|
C:ALA304
|
3.9
|
47.2
|
1.0
|
CA
|
C:VAL302
|
4.1
|
33.0
|
1.0
|
N
|
C:VAL302
|
4.1
|
31.5
|
1.0
|
CB
|
C:ASP263
|
4.1
|
42.1
|
1.0
|
CG
|
C:ASP263
|
4.3
|
41.8
|
1.0
|
CA
|
C:SER301
|
4.3
|
30.4
|
1.0
|
N
|
C:GLY306
|
4.4
|
46.0
|
1.0
|
CA
|
C:ASP263
|
4.4
|
40.5
|
1.0
|
C
|
C:ALA305
|
4.4
|
48.0
|
1.0
|
CB
|
C:SER301
|
4.5
|
29.9
|
1.0
|
C
|
C:VAL302
|
4.5
|
36.7
|
1.0
|
OG
|
C:SER301
|
4.5
|
30.0
|
1.0
|
N
|
C:ALA304
|
4.6
|
44.9
|
1.0
|
OD2
|
C:ASP263
|
4.6
|
42.6
|
1.0
|
CA
|
C:GLY306
|
4.7
|
44.0
|
1.0
|
OD1
|
C:ASP263
|
4.7
|
39.2
|
1.0
|
O
|
C:ALA305
|
4.7
|
46.6
|
1.0
|
N
|
C:THR264
|
4.7
|
36.6
|
1.0
|
O
|
C:THR307
|
4.7
|
35.8
|
1.0
|
O
|
C:VAL302
|
4.7
|
37.4
|
1.0
|
N
|
C:THR307
|
4.8
|
39.3
|
1.0
|
N
|
C:ALA305
|
4.8
|
49.9
|
1.0
|
CA
|
C:ALA304
|
4.8
|
45.9
|
1.0
|
CA
|
C:THR307
|
4.8
|
37.7
|
1.0
|
CA
|
C:SER310
|
4.8
|
35.5
|
1.0
|
CA
|
C:ALA305
|
4.8
|
50.3
|
1.0
|
N
|
C:THR265
|
4.8
|
35.2
|
1.0
|
N
|
C:ASP263
|
4.9
|
40.6
|
1.0
|
CA
|
C:THR264
|
4.9
|
34.9
|
1.0
|
C
|
C:THR265
|
5.0
|
31.5
|
1.0
|
C
|
C:THR264
|
5.0
|
34.1
|
1.0
|
|
Sodium binding site 6 out
of 8 in 6wk0
Go back to
Sodium Binding Sites List in 6wk0
Sodium binding site 6 out
of 8 in the Crystal Structure of Human Ribokinase in Complex with Amppcp and Ribose
Mono view
Stereo pair view
|
A full contact list of Sodium with other atoms in the Na binding
site number 6 of Crystal Structure of Human Ribokinase in Complex with Amppcp and Ribose within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Na404
b:34.8
occ:1.00
|
O
|
C:HOH559
|
2.2
|
27.4
|
1.0
|
O
|
C:HOH524
|
2.4
|
31.1
|
1.0
|
O
|
C:HOH525
|
2.5
|
23.2
|
1.0
|
O1B
|
C:ACP402
|
2.5
|
38.9
|
1.0
|
O
|
C:HOH616
|
2.6
|
29.0
|
1.0
|
PB
|
C:ACP402
|
3.9
|
43.3
|
1.0
|
NZ
|
C:LYS54
|
3.9
|
32.5
|
1.0
|
O
|
C:HOH642
|
3.9
|
42.5
|
1.0
|
CA
|
C:GLY268
|
4.0
|
26.2
|
1.0
|
O2G
|
C:ACP402
|
4.0
|
45.9
|
1.0
|
OE2
|
C:GLU202
|
4.1
|
33.1
|
1.0
|
O2B
|
C:ACP402
|
4.1
|
37.3
|
1.0
|
ND2
|
C:ASN199
|
4.2
|
28.9
|
1.0
|
OD1
|
C:ASP269
|
4.3
|
27.6
|
1.0
|
OD1
|
C:ASN177
|
4.3
|
22.6
|
1.0
|
C
|
C:GLY268
|
4.3
|
25.6
|
1.0
|
CB
|
C:ALA179
|
4.4
|
27.1
|
1.0
|
ND2
|
C:ASN177
|
4.4
|
20.8
|
1.0
|
OE1
|
C:GLU202
|
4.5
|
29.4
|
1.0
|
N
|
C:ASP269
|
4.5
|
26.0
|
1.0
|
N
|
C:GLY268
|
4.7
|
27.4
|
1.0
|
O5
|
C:RIB401
|
4.7
|
27.5
|
1.0
|
CD
|
C:GLU202
|
4.7
|
30.7
|
1.0
|
O3A
|
C:ACP402
|
4.8
|
35.8
|
1.0
|
CE
|
C:LYS54
|
4.8
|
31.4
|
1.0
|
CG
|
C:ASN177
|
4.8
|
22.1
|
1.0
|
O
|
D:HOH526
|
4.9
|
56.4
|
1.0
|
CG
|
C:ASP269
|
5.0
|
28.4
|
1.0
|
O
|
C:GLY268
|
5.0
|
24.7
|
1.0
|
|
Sodium binding site 7 out
of 8 in 6wk0
Go back to
Sodium Binding Sites List in 6wk0
Sodium binding site 7 out
of 8 in the Crystal Structure of Human Ribokinase in Complex with Amppcp and Ribose
Mono view
Stereo pair view
|
A full contact list of Sodium with other atoms in the Na binding
site number 7 of Crystal Structure of Human Ribokinase in Complex with Amppcp and Ribose within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Na402
b:55.3
occ:1.00
|
O
|
D:HOH531
|
2.3
|
47.9
|
1.0
|
O
|
D:HOH553
|
2.3
|
46.8
|
1.0
|
O
|
D:SER301
|
2.4
|
52.0
|
1.0
|
O
|
D:ASP263
|
2.4
|
61.6
|
1.0
|
O
|
D:ALA304
|
2.6
|
57.9
|
1.0
|
OG
|
D:SER310
|
2.8
|
52.7
|
1.0
|
C
|
D:SER301
|
3.2
|
49.3
|
1.0
|
CB
|
D:SER310
|
3.3
|
50.9
|
1.0
|
C
|
D:ASP263
|
3.6
|
64.5
|
1.0
|
O
|
D:THR265
|
3.7
|
49.9
|
1.0
|
CA
|
D:VAL302
|
3.9
|
52.8
|
1.0
|
C
|
D:ALA304
|
3.9
|
57.6
|
1.0
|
N
|
D:VAL302
|
3.9
|
50.6
|
1.0
|
CA
|
D:SER301
|
4.2
|
47.1
|
1.0
|
CB
|
D:ASP263
|
4.2
|
67.0
|
1.0
|
C
|
D:VAL302
|
4.3
|
54.9
|
1.0
|
OG
|
D:SER301
|
4.4
|
47.5
|
1.0
|
CB
|
D:SER301
|
4.4
|
46.0
|
1.0
|
CA
|
D:ASP263
|
4.4
|
67.4
|
1.0
|
N
|
D:THR307
|
4.5
|
54.8
|
1.0
|
N
|
D:ALA304
|
4.5
|
56.0
|
1.0
|
CG
|
D:ASP263
|
4.5
|
67.2
|
1.0
|
N
|
D:THR264
|
4.5
|
63.9
|
1.0
|
N
|
D:THR265
|
4.6
|
56.8
|
1.0
|
C
|
D:THR264
|
4.6
|
58.2
|
1.0
|
O
|
D:VAL302
|
4.6
|
56.2
|
1.0
|
OD1
|
D:ASP263
|
4.6
|
68.3
|
1.0
|
CA
|
D:THR264
|
4.7
|
61.9
|
1.0
|
N
|
D:GLY306
|
4.7
|
58.7
|
1.0
|
C
|
D:ALA305
|
4.7
|
59.5
|
1.0
|
CA
|
D:ALA304
|
4.8
|
56.5
|
1.0
|
C
|
D:THR265
|
4.8
|
52.0
|
1.0
|
N
|
D:ALA305
|
4.8
|
60.1
|
1.0
|
CA
|
D:SER310
|
4.8
|
48.6
|
1.0
|
N
|
D:ASP263
|
4.9
|
68.0
|
1.0
|
CA
|
D:ALA305
|
4.9
|
61.0
|
1.0
|
CA
|
D:THR307
|
4.9
|
52.1
|
1.0
|
O
|
D:THR307
|
4.9
|
50.2
|
1.0
|
N
|
D:GLN303
|
5.0
|
55.8
|
1.0
|
OD2
|
D:ASP263
|
5.0
|
70.2
|
1.0
|
|
Sodium binding site 8 out
of 8 in 6wk0
Go back to
Sodium Binding Sites List in 6wk0
Sodium binding site 8 out
of 8 in the Crystal Structure of Human Ribokinase in Complex with Amppcp and Ribose
Mono view
Stereo pair view
|
A full contact list of Sodium with other atoms in the Na binding
site number 8 of Crystal Structure of Human Ribokinase in Complex with Amppcp and Ribose within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Na403
b:54.5
occ:1.00
|
O
|
D:HOH575
|
2.2
|
37.2
|
1.0
|
O
|
D:HOH540
|
2.2
|
49.7
|
1.0
|
O1B
|
D:ACP401
|
2.5
|
66.8
|
1.0
|
O
|
D:HOH564
|
2.6
|
57.8
|
1.0
|
CA
|
D:GLY268
|
3.9
|
48.3
|
1.0
|
O1G
|
D:ACP401
|
3.9
|
79.4
|
1.0
|
PB
|
D:ACP401
|
3.9
|
75.0
|
1.0
|
ND2
|
D:ASN199
|
3.9
|
66.0
|
1.0
|
NZ
|
D:LYS54
|
4.0
|
49.7
|
1.0
|
OE2
|
D:GLU202
|
4.2
|
69.5
|
1.0
|
C
|
D:GLY268
|
4.4
|
45.8
|
1.0
|
OE1
|
D:GLU202
|
4.5
|
71.2
|
1.0
|
ND2
|
D:ASN177
|
4.5
|
50.6
|
1.0
|
OD1
|
D:ASN177
|
4.6
|
48.0
|
1.0
|
O2B
|
D:ACP401
|
4.6
|
54.7
|
1.0
|
OD1
|
D:ASP269
|
4.6
|
43.9
|
1.0
|
N
|
D:GLY268
|
4.7
|
49.0
|
1.0
|
N
|
D:ASP269
|
4.7
|
44.6
|
1.0
|
O
|
D:HOH511
|
4.7
|
49.5
|
1.0
|
O1A
|
D:ACP401
|
4.7
|
71.3
|
1.0
|
CB
|
D:ALA179
|
4.7
|
55.9
|
1.0
|
C3B
|
D:ACP401
|
4.7
|
75.5
|
1.0
|
CD
|
D:GLU202
|
4.8
|
72.0
|
1.0
|
CG
|
D:ASN199
|
4.9
|
68.9
|
1.0
|
O
|
D:GLY268
|
4.9
|
44.4
|
1.0
|
PG
|
D:ACP401
|
5.0
|
86.5
|
1.0
|
CB
|
D:ASN199
|
5.0
|
67.5
|
1.0
|
|
Reference:
J.Park,
J.Park.
N/A N/A.
Page generated: Tue Oct 8 14:38:38 2024
|