Sodium in PDB 6w4u: Crystal Structure of Triosephosphate Isomerase From Stenotrophomonas Maltophilia K279A

All present enzymatic activity of Crystal Structure of Triosephosphate Isomerase From Stenotrophomonas Maltophilia K279A:
5.3.1.1;

The structure of Crystal Structure of Triosephosphate Isomerase From Stenotrophomonas Maltophilia K279A, PDB code: 6w4u was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.28 / 1.70
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	43.500, 46.660, 66.830, 71.90, 71.09, 68.36
R / Rfree (%)	16.8 / 21.5

The structure of Crystal Structure of Triosephosphate Isomerase From Stenotrophomonas Maltophilia K279A also contains other interesting chemical elements:

Chlorine

(Cl)

2 atoms

The binding sites of Sodium atom in the Crystal Structure of Triosephosphate Isomerase From Stenotrophomonas Maltophilia K279A (pdb code 6w4u). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of Triosephosphate Isomerase From Stenotrophomonas Maltophilia K279A, PDB code: 6w4u:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of Triosephosphate Isomerase From Stenotrophomonas Maltophilia K279A


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Triosephosphate Isomerase From Stenotrophomonas Maltophilia K279A within 5.0Å range: probe atom residue distance (Å) B Occ A:Na301 b:33.6 occ:1.00 O A:HOH455 2.3 40.6 1.0 O A:VAL226 2.4 29.4 1.0 O A:GLN223 2.4 33.7 1.0 O A:HOH557 2.5 44.0 1.0 O A:PHE221 2.5 39.0 1.0 C A:VAL226 3.5 25.9 1.0 C A:GLN223 3.5 35.3 1.0 C A:PHE221 3.7 39.9 1.0 N A:VAL226 3.9 27.6 1.0 NZ A:LYS4 4.0 62.5 1.0 CE A:LYS4 4.0 67.6 1.0 C A:PRO224 4.1 32.1 1.0 O A:PRO224 4.1 37.8 1.0 CA A:PRO224 4.2 35.4 1.0 C A:ALA222 4.2 40.4 1.0 N A:GLN223 4.2 37.0 1.0 CA A:VAL226 4.2 30.1 1.0 OXT A:ASN251 4.3 94.0 1.0 N A:PRO224 4.3 35.1 1.0 OD1 A:ASP227 4.4 35.2 1.0 O A:ALA222 4.5 44.4 1.0 CA A:GLN223 4.5 34.2 1.0 N A:ASP227 4.5 26.0 1.0 CB A:VAL226 4.5 29.9 1.0 CA A:PHE221 4.5 38.1 1.0 N A:ALA222 4.6 37.2 1.0 CA A:ALA222 4.6 38.2 1.0 N A:ASP225 4.6 30.3 1.0 CA A:ASP227 4.7 28.7 1.0 C A:ASP225 4.9 29.3 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of Triosephosphate Isomerase From Stenotrophomonas Maltophilia K279A


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Triosephosphate Isomerase From Stenotrophomonas Maltophilia K279A within 5.0Å range: probe atom residue distance (Å) B Occ B:Na301 b:30.0 occ:1.00 O B:HOH464 2.3 37.9 1.0 O B:VAL226 2.3 24.7 1.0 O B:GLN223 2.3 29.1 1.0 O B:PHE221 2.3 33.7 1.0 O B:HOH504 2.4 36.9 1.0 O B:HOH530 2.5 36.1 1.0 C B:VAL226 3.5 25.0 1.0 C B:GLN223 3.5 29.4 1.0 C B:PHE221 3.5 28.5 1.0 N B:VAL226 3.9 25.3 1.0 C B:ALA222 4.0 37.3 1.0 NZ B:LYS4 4.0 48.5 1.0 N B:GLN223 4.0 32.4 1.0 O B:HOH407 4.1 50.2 1.0 O B:PRO224 4.1 35.5 1.0 C B:PRO224 4.2 29.3 1.0 CA B:VAL226 4.2 26.4 1.0 CA B:PRO224 4.2 36.2 1.0 O B:ALA222 4.2 38.4 1.0 N B:PRO224 4.3 30.5 1.0 CA B:ALA222 4.3 36.0 1.0 O B:HOH461 4.4 39.9 1.0 N B:ALA222 4.4 31.1 1.0 CA B:PHE221 4.4 28.7 1.0 CA B:GLN223 4.4 35.6 1.0 CB B:VAL226 4.5 26.3 1.0 N B:ASP227 4.5 22.4 1.0 OD1 B:ASP227 4.6 31.0 1.0 N B:ASP225 4.7 29.3 1.0 CA B:ASP227 4.8 25.4 1.0 O B:ASN251 5.0 62.0 1.0 C B:ASP225 5.0 26.6 1.0 CE B:LYS4 5.0 52.8 1.0

J.Abendroth, P.S.Horanyi, D.D.Lorimer, T.E.Edwards. Crystal Structure of Triosephosphate Isomerase From Stenotrophomonas Maltophilia K279A To Be Published.