Sodium in PDB 6wjo: Crystal Structure of Wild-Type Arginine Repressor From the Pathogenic Bacterium Corynebacterium Pseudotuberculosis Bound to Tyrosine

The structure of Crystal Structure of Wild-Type Arginine Repressor From the Pathogenic Bacterium Corynebacterium Pseudotuberculosis Bound to Tyrosine, PDB code: 6wjo was solved by A.F.Z.Nascimento, J.E.Hernandez-Gonzalez, M.A.B.De Morais, M.T.Murakami, C.M.A.Carareto, R.K.Arni, R.B.Mariutti, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.75 / 1.69
Space group	P 21 3
Cell size a, b, c (Å), α, β, γ (°)	82.990, 82.990, 82.990, 90.00, 90.00, 90.00
R / Rfree (%)	18.1 / 21.2

The binding sites of Sodium atom in the Crystal Structure of Wild-Type Arginine Repressor From the Pathogenic Bacterium Corynebacterium Pseudotuberculosis Bound to Tyrosine (pdb code 6wjo). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of Wild-Type Arginine Repressor From the Pathogenic Bacterium Corynebacterium Pseudotuberculosis Bound to Tyrosine, PDB code: 6wjo:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of Wild-Type Arginine Repressor From the Pathogenic Bacterium Corynebacterium Pseudotuberculosis Bound to Tyrosine


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Wild-Type Arginine Repressor From the Pathogenic Bacterium Corynebacterium Pseudotuberculosis Bound to Tyrosine within 5.0Å range: probe atom residue distance (Å) B Occ A:Na203 b:34.1 occ:1.00 OD1 A:ASP136 2.6 11.0 1.0 O B:HOH333 2.8 27.4 1.0 O A:HOH310 3.0 45.0 1.0 CB A:PRO111 3.2 14.1 1.0 OH B:TYR201 3.4 13.6 1.0 CG A:ASP136 3.6 10.9 1.0 CA A:PRO111 3.6 13.4 1.0 CG A:PRO111 3.9 15.7 1.0 OD2 A:ASP137 4.0 16.9 1.0 OD2 A:ASP136 4.0 13.4 1.0 N A:GLY112 4.4 8.7 1.0 C A:PRO111 4.5 11.3 1.0 CG A:ASP137 4.5 15.6 1.0 CB A:ASP137 4.6 14.7 1.0 CZ B:TYR201 4.6 15.0 1.0 N A:PRO111 4.6 14.0 1.0 CB A:ASP136 4.7 8.8 1.0 CD A:PRO111 5.0 15.2 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of Wild-Type Arginine Repressor From the Pathogenic Bacterium Corynebacterium Pseudotuberculosis Bound to Tyrosine


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Wild-Type Arginine Repressor From the Pathogenic Bacterium Corynebacterium Pseudotuberculosis Bound to Tyrosine within 5.0Å range: probe atom residue distance (Å) B Occ A:Na204 b:46.9 occ:0.33 O A:HOH323 3.0 26.3 1.0 O A:ALA134 3.0 9.7 1.0 CA A:GLY135 3.9 11.1 1.0 C A:ALA134 4.1 11.3 1.0 N A:GLY135 4.5 12.0 1.0 O A:HOH308 4.6 11.7 1.0 C A:GLY135 4.9 12.3 1.0 O A:HOH340 5.0 29.4 1.0

R.B.Mariutti, J.E.Hernandez-Gonzalez, A.F.Z.Nascimento, M.A.B.De Morais, M.T.Murakami, C.M.A.Carareto, R.K.Arni. A Single P115Q Mutation Modulates Specificity in the Corynebacterium Pseudotuberculosis Arginine Repressor. Biochim Biophys Acta Gen V.1864 29597 2020SUBJ.
ISSN: ISSN 1872-8006
PubMed: 32156582
DOI: 10.1016/J.BBAGEN.2020.129597