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Sodium in PDB 6w7p: Crystal Structure Analysis of Space-Grown Lysozyme - Ground Experiment

Enzymatic activity of Crystal Structure Analysis of Space-Grown Lysozyme - Ground Experiment

All present enzymatic activity of Crystal Structure Analysis of Space-Grown Lysozyme - Ground Experiment:
3.2.1.17;

Protein crystallography data

The structure of Crystal Structure Analysis of Space-Grown Lysozyme - Ground Experiment, PDB code: 6w7p was solved by D.Fernandez, S.Russi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.60
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.866, 78.866, 37.155, 90.00, 90.00, 90.00
R / Rfree (%) 17 / 22

Other elements in 6w7p:

The structure of Crystal Structure Analysis of Space-Grown Lysozyme - Ground Experiment also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure Analysis of Space-Grown Lysozyme - Ground Experiment (pdb code 6w7p). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure Analysis of Space-Grown Lysozyme - Ground Experiment, PDB code: 6w7p:

Sodium binding site 1 out of 1 in 6w7p

Go back to Sodium Binding Sites List in 6w7p
Sodium binding site 1 out of 1 in the Crystal Structure Analysis of Space-Grown Lysozyme - Ground Experiment


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure Analysis of Space-Grown Lysozyme - Ground Experiment within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na201

b:23.9
occ:1.00
 O A:CYS64 2.2 19.7 1.0
O A:SER60 2.3 23.6 1.0
O A:HOH367 2.4 26.5 1.0
O A:ARG73 2.5 26.0 1.0
O A:HOH347 2.5 22.6 1.0
OG A:SER72 2.6 26.7 1.0
CB A:SER72 3.3 24.5 1.0
C A:CYS64 3.4 18.9 1.0
C A:SER60 3.5 21.6 1.0
C A:ARG73 3.5 28.2 1.0
CA A:ASN65 3.9 21.2 1.0
N A:ARG73 4.0 26.8 1.0
N A:ASN65 4.0 20.0 1.0
CA A:SER60 4.1 19.9 1.0
C A:SER72 4.2 30.4 1.0
CB A:SER60 4.2 20.0 1.0
CA A:ARG73 4.3 30.2 1.0
N A:ASN74 4.4 28.2 1.0
CA A:SER72 4.4 27.6 1.0
N A:CYS64 4.4 21.3 1.0
CA A:CYS64 4.5 22.0 1.0
O A:ARG61 4.5 25.7 1.0
CA A:ASN74 4.5 24.8 1.0
C A:ARG61 4.6 28.3 1.0
N A:ARG61 4.6 22.9 1.0
CB A:ASN74 4.6 25.9 1.0
N A:ASP66 4.6 20.0 1.0
OD1 A:ASN65 4.6 26.2 1.0
O A:HOH401 4.7 43.5 1.0
CB A:THR69 4.7 26.4 1.0
CL A:CL203 4.7 30.8 1.0
O A:SER72 4.8 28.8 1.0
CB A:ASN65 4.8 21.2 1.0
C A:ASN65 4.8 20.6 1.0
CA A:ARG61 4.8 27.4 1.0
N A:TRP62 4.9 22.5 1.0

Reference:

D.Fernandez, S.Russi. Protein Structural Changes on A Cubesat Under Rocket Acceleration Profile To Be Published.
Page generated: Tue Oct 8 14:33:10 2024

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