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Sodium in PDB, part 200 (files: 7961-8000), PDB 6gn7-6h6l

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 7961-8000 (PDB 6gn7-6h6l).
  1. 6gn7 (Na: 2) - X-Ray Structure of the Complex Between Human Alpha Thrombin and NU172, A Duplex/Quadruplex 26-Mer Dna Aptamer, in the Presence of Sodium Ions.
  2. 6go4 (Na: 1) - Tdt Chimera (LOOP1 of Pol Mu) - Binary Complex with Ddctp
    Other atoms: Mg (1);
  3. 6go5 (Na: 2) - Tdt Chimera (LOOP1 of Pol Mu) - Ternary Complex with 1-Nt Gapped Dna Substrate
    Other atoms: Mg (2);
  4. 6go6 (Na: 1) - Tdt Chimera (LOOP1 of Pol Mu) - Ternary Complex with Downstream Dsdna
    Other atoms: Mg (1);
  5. 6go7 (Na: 1) - Tdt Chimera (LOOP1 of Pol Mu) - Full Dna Synapsis Complex
    Other atoms: Mg (1);
  6. 6gq4 (Na: 1) - Neisseria Gonorrhoeae Adhesin Complex Protein
  7. 6gqc (Na: 2) - Crystal Structure of the PSMALPHA3 Peptide Mutant G16A Forming Cross- Alpha Amyloid-Like Fibril
    Other atoms: Cl (1);
  8. 6gre (Na: 2) - Crystal Structure of the Tandem DUF26 Ectodomain From the Arabidopsis Thaliana Cysteine-Rich Receptor-Like Protein PDLP5.
  9. 6grj (Na: 10) - Structure of the Ahlb Pore of the Tripartite Alpha-Pore Forming Toxin, Ahl, From Aeromonas Hydrophila.
    Other atoms: Cl (27);
  10. 6grp (Na: 1) - Crystal Structure of Human Transthyretin in Complex with 3,5,6- Trichloro-2-Pyridinol (TC2P)
    Other atoms: Cl (12);
  11. 6gt3 (Na: 1) - Crystal Structure of the A2A-STAR2-BRIL562 in Complex with AZD4635 at 2.0A Resolution
    Other atoms: F (1); Cl (1);
  12. 6gtb (Na: 1) - 17BETA-Hydroxysteroid Dehydrogenase 14 Variant T205 in Complex with FB211
  13. 6gto (Na: 4) - Structure of the Atar Antitoxin
  14. 6gux (Na: 1) - Dark-Adapted Structure of Archaerhodopsin-3 at 100K
    Other atoms: Ca (1); Cl (3);
  15. 6guy (Na: 1) - Room Temperature Structure of Archaerhodopsin-3 Via Lcp Extruder Using Synchrotron Radiation
    Other atoms: Cl (3); Ca (1);
  16. 6guz (Na: 1) - Ground State Structure of Archaerhodopsin-3 Obtained From Lcp Crystals Using A Thin-Film Sandwich at Room Temperature
    Other atoms: Ca (1); Cl (3);
  17. 6gvp (Na: 3) - Tailspike Protein Mutant E372Q (Delta N471/S472) of E. Coli Bacteriophage HK620 in Complex with Hexasaccharide
  18. 6gvr (Na: 2) - Tailspike Protein Mutant E372Q (Delta N471/S472) of E. Coli Bacteriophage HK620 in Complex with Pentasaccharide
  19. 6gw1 (Na: 2) - Gii.10 Human Norovirus Protruding Domain in Complex with Glycochenodeoxycholate (Gcdca)
  20. 6gwe (Na: 2) - Crystal Structure of Thrombin Bound to P2 Macrocycle
  21. 6gxc (Na: 1) - Bacterial Oligosaccharyltransferase Pglb in Complex with An Inhibitory Peptide and A Reactive Lipid-Linked Oligosaccharide Analog
    Other atoms: Mn (2);
  22. 6gxv (Na: 2) - Amylase in Complex with Acarbose
    Other atoms: Ca (6);
  23. 6gy5 (Na: 14) - Crystal Structure of the Kelch Domain of Human KLHL20 in Complex with DAPK1 Peptide
    Other atoms: Cl (1);
  24. 6gya (Na: 4) - Amylase in Complex with Branched Ligand
    Other atoms: Ca (12);
  25. 6gyv (Na: 1) - Lariat-Capping Ribozyme (Circular Permutation Form)
    Other atoms: Mg (2);
  26. 6gz8 (Na: 11) - First Germn Domain of the Sporulation Protein Germ From Bacillus Subtilis
  27. 6gzy (Na: 2) - Hoip-FRAGMENT5 Complex
    Other atoms: Zn (8);
  28. 6h08 (Na: 2) - The Crystal Structure of Engineered Cytochrome C Peroxidase From Saccharomyces Cerevisiae with A HIS175ME-His Proximal Ligand Substitution
    Other atoms: Co (6); Mn (1); Fe (3);
  29. 6h0m (Na: 1) - 17BETA-Hydroxysteroid Dehydrogenase Type 14 Mutant K158A in Complex with Nicotinamide Adenine Dinucleotide
  30. 6h0u (Na: 1) - Glycogen Synthase Kinase-3 Beta (GSK3) Complex with A Covalent [1,2, 4]Triazolo[1,5-A][1,3,5]Triazine Inhibitor
    Other atoms: Cl (2);
  31. 6h0w (Na: 1) - Crystal Structure of KDM4D with Tetrazolylhydrazide Ligand NS035
    Other atoms: Ni (1); Zn (1); Cl (1);
  32. 6h0y (Na: 1) - Crystal Structure of KDM4D with Tetrazolylhydrazide Ligand NS022
    Other atoms: Ni (1); Zn (1);
  33. 6h0z (Na: 1) - Crystal Structure of KDM4D with Tetrazolylhydrazide Ligand NR067
    Other atoms: Ni (1); Zn (1); Br (1); Cl (1);
  34. 6h10 (Na: 1) - Crystal Structure of KDM4D with Tetrazolylhydrazide Ligand NR073
    Other atoms: Ni (1); Zn (1); Cl (1);
  35. 6h19 (Na: 1) - Crystal Structure of Ethyl-Paraoxon Inhibited Recombinant Human Bile Salt Activated Lipase (Aged Form)
    Other atoms: Zn (10);
  36. 6h1p (Na: 1) - Cold-Adapted Beta-D-Galactosidase From Arthrobacter Sp. 32CB - Data Collected at Room Temperature
  37. 6h1z (Na: 1) - AFGH61B Wild-Type
    Other atoms: Cu (2);
  38. 6h3z (Na: 2) - Crystal Structure of A C-Terminal MIF4G Domain in NOT1
  39. 6h6k (Na: 6) - The Structure of the Fkr Mutant of the Archaeal Translation Initiation Factor 2 Gamma Subunit in Complex with Gdpcp, Obtained in the Absence of Magnesium Salts in the Crystallization Solution.
  40. 6h6l (Na: 4) - Murine Norovirus Protruding Domain (CW3 Strain) in Complex with the CD300LF Receptor and Glycochenodeoxycholate (Gcdca)
    Other atoms: Mg (8);
Page generated: Sat Sep 25 14:50:45 2021

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