Sodium in PDB 6h10: Crystal Structure of KDM4D with Tetrazolylhydrazide Ligand NR073

The structure of Crystal Structure of KDM4D with Tetrazolylhydrazide Ligand NR073, PDB code: 6h10 was solved by P.H.Malecki, M.S.Weiss, U.Heinemann, A.Link, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	35.73 / 1.10
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	71.454, 71.454, 150.693, 90.00, 90.00, 90.00
R / Rfree (%)	12.1 / 13.3

The structure of Crystal Structure of KDM4D with Tetrazolylhydrazide Ligand NR073 also contains other interesting chemical elements:

Nickel	(Ni)	1 atom
Zinc	(Zn)	1 atom
Chlorine	(Cl)	1 atom

The binding sites of Sodium atom in the Crystal Structure of KDM4D with Tetrazolylhydrazide Ligand NR073 (pdb code 6h10). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of KDM4D with Tetrazolylhydrazide Ligand NR073, PDB code: 6h10:

Sodium binding site 1 out of 1 in the Crystal Structure of KDM4D with Tetrazolylhydrazide Ligand NR073


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of KDM4D with Tetrazolylhydrazide Ligand NR073 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na403 b:12.9 occ:0.38 O A:HOH618 2.4 13.9 1.0 O A:HOH850 2.4 34.5 0.5 ND2 A:ASN262 2.6 10.5 1.0 CG A:ASN262 3.4 10.6 1.0 OD1 A:ASN262 3.5 13.4 1.0 O A:PHE261 3.8 9.4 1.0 O A:HOH654 3.8 36.2 1.0 OD1 A:ASN17 4.1 16.3 1.0 CB A:ASN262 4.8 9.4 1.0 O A:HOH736 4.8 13.3 1.0 C A:PHE261 4.8 8.6 1.0 O A:ASN15 4.9 10.4 1.0

P.H.Malecki, M.S.Weiss, U.Heinemann, A.Link. Crystal Structure of KDM4D with Tetrazolylhydrazide Ligand NR073 To Be Published.