Sodium in PDB 6guz: Ground State Structure of Archaerhodopsin-3 Obtained From Lcp Crystals Using A Thin-Film Sandwich at Room Temperature

The structure of Ground State Structure of Archaerhodopsin-3 Obtained From Lcp Crystals Using A Thin-Film Sandwich at Room Temperature, PDB code: 6guz was solved by I.Moraes, P.J.Judge, J.F.Bada Juarez, J.Vinals, D.Axford, A.Watts, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	35.52 / 1.90
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	46.254, 48.302, 104.835, 90.00, 90.00, 90.00
R / Rfree (%)	18 / 22.1

The structure of Ground State Structure of Archaerhodopsin-3 Obtained From Lcp Crystals Using A Thin-Film Sandwich at Room Temperature also contains other interesting chemical elements:

Calcium	(Ca)	1 atom
Chlorine	(Cl)	3 atoms

The binding sites of Sodium atom in the Ground State Structure of Archaerhodopsin-3 Obtained From Lcp Crystals Using A Thin-Film Sandwich at Room Temperature (pdb code 6guz). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Ground State Structure of Archaerhodopsin-3 Obtained From Lcp Crystals Using A Thin-Film Sandwich at Room Temperature, PDB code: 6guz:

Sodium binding site 1 out of 1 in the Ground State Structure of Archaerhodopsin-3 Obtained From Lcp Crystals Using A Thin-Film Sandwich at Room Temperature


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Ground State Structure of Archaerhodopsin-3 Obtained From Lcp Crystals Using A Thin-Film Sandwich at Room Temperature within 5.0Å range: probe atom residue distance (Å) B Occ A:Na714 b:19.4 occ:1.00 H A:LEU13 2.0 19.1 1.0 OD1 A:ASP11 2.6 14.4 1.0 OD1 A:ASP15 2.6 20.0 1.0 OG1 A:THR20 2.7 16.0 1.0 HB2 A:LEU13 2.7 20.9 1.0 HG23 A:THR20 3.0 14.1 1.0 HG21 A:THR20 3.0 14.1 1.0 N A:LEU13 3.0 19.2 1.0 H A:ASP15 3.1 17.8 1.0 O A:ARG17 3.2 14.4 1.0 HB2 A:ARG17 3.2 13.8 1.0 HG1 A:THR20 3.2 15.4 1.0 CG2 A:THR20 3.3 14.0 1.0 H A:ARG17 3.3 13.5 1.0 H A:GLY14 3.3 18.9 1.0 HA A:ASP11 3.3 14.9 1.0 H A:LEU12 3.4 16.5 1.0 CB A:LEU13 3.5 20.8 1.0 N A:LEU12 3.5 15.9 1.0 CB A:THR20 3.6 14.2 1.0 CA A:LEU13 3.6 19.4 1.0 C A:ASP11 3.6 16.1 1.0 CG A:ASP15 3.7 20.8 1.0 CG A:ASP11 3.7 13.9 1.0 N A:GLY14 3.8 18.8 1.0 HG A:LEU13 3.8 23.3 1.0 CA A:ASP11 3.9 14.6 1.0 HB A:THR20 4.0 14.3 1.0 C A:LEU13 4.0 19.5 1.0 C A:LEU12 4.0 18.5 1.0 N A:ASP15 4.0 17.3 1.0 HB2 A:LEU12 4.0 18.9 1.0 C A:ARG17 4.0 14.8 1.0 HD12 A:LEU13 4.1 24.0 1.0 CB A:ARG17 4.1 13.8 1.0 N A:ARG17 4.1 13.1 1.0 CG A:LEU13 4.2 23.4 1.0 O A:ASP11 4.2 14.8 1.0 HG22 A:THR20 4.2 14.1 1.0 HB3 A:LEU13 4.2 21.0 1.0 CA A:LEU12 4.2 18.3 1.0 OD2 A:ASP15 4.3 25.1 1.0 CA A:ARG17 4.3 14.0 1.0 HH21 A:ARG17 4.3 14.6 1.0 CB A:ASP11 4.3 14.6 1.0 H A:THR20 4.4 13.1 1.0 HE A:ARG17 4.4 14.2 1.0 HB3 A:ARG17 4.5 13.8 1.0 HA A:LEU13 4.5 19.6 1.0 H A:GLY16 4.6 16.1 1.0 CB A:LEU12 4.6 18.4 1.0 CD1 A:LEU13 4.6 24.2 1.0 OD2 A:ASP11 4.7 12.6 1.0 NH2 A:ARG17 4.7 14.8 1.0 CB A:ASP15 4.7 20.0 1.0 CA A:ASP15 4.7 17.8 1.0 NE A:ARG17 4.7 14.0 1.0 CA A:GLY14 4.8 18.8 1.0 HB3 A:LEU12 4.8 18.9 1.0 HB2 A:ASP11 4.8 14.4 1.0 N A:GLY16 4.8 15.9 1.0 C A:GLY14 4.9 19.2 1.0 CA A:THR20 4.9 13.4 1.0 O A:LEU13 4.9 20.2 1.0 C A:ASP15 4.9 17.1 1.0 HA2 A:GLY14 4.9 18.8 1.0 CZ A:ARG17 4.9 14.3 1.0 HB3 A:ASP15 5.0 19.6 1.0

J.F.Bada Juarez, P.J.Judge, J.Vinals, D.Axford, J.Birch, P.Aller, A.Butryn, R.L.Owen, D.A.Sherrell, J.H.Beale, A.M.Orville, A.Watts, I.Moraes. Room Temperature Structure of the Archaerhodopsin-3 Obtained From Lcp Crystals Using A Thin-Film Sandwich To Be Published.