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Sodium in PDB 6h1p: Cold-Adapted Beta-D-Galactosidase From Arthrobacter Sp. 32CB - Data Collected at Room Temperature

Enzymatic activity of Cold-Adapted Beta-D-Galactosidase From Arthrobacter Sp. 32CB - Data Collected at Room Temperature

All present enzymatic activity of Cold-Adapted Beta-D-Galactosidase From Arthrobacter Sp. 32CB - Data Collected at Room Temperature:
3.2.1.23;

Protein crystallography data

The structure of Cold-Adapted Beta-D-Galactosidase From Arthrobacter Sp. 32CB - Data Collected at Room Temperature, PDB code: 6h1p was solved by M.Rutkiewicz, A.Bujacz, G.Bujacz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.05 / 3.01
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 140.219, 140.219, 127.995, 90.00, 90.00, 120.00
R / Rfree (%) 18.2 / 22.9

Sodium Binding Sites:

The binding sites of Sodium atom in the Cold-Adapted Beta-D-Galactosidase From Arthrobacter Sp. 32CB - Data Collected at Room Temperature (pdb code 6h1p). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Cold-Adapted Beta-D-Galactosidase From Arthrobacter Sp. 32CB - Data Collected at Room Temperature, PDB code: 6h1p:

Sodium binding site 1 out of 1 in 6h1p

Go back to Sodium Binding Sites List in 6h1p
Sodium binding site 1 out of 1 in the Cold-Adapted Beta-D-Galactosidase From Arthrobacter Sp. 32CB - Data Collected at Room Temperature


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Cold-Adapted Beta-D-Galactosidase From Arthrobacter Sp. 32CB - Data Collected at Room Temperature within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1101

b:79.0
occ:1.00
 OD1 A:ASP584 2.3 58.1 1.0
OD2 A:ASP207 2.3 91.6 1.0
NE1 A:TRP548 3.0 40.3 1.0
CG A:ASP207 3.4 90.0 1.0
O A:PHE581 3.5 71.5 1.0
CG A:ASP584 3.5 52.3 1.0
CE2 A:TRP548 3.7 37.9 1.0
CZ2 A:TRP548 3.7 42.2 1.0
OD1 A:ASP207 4.1 94.9 1.0
CE1 A:HIS520 4.1 48.3 1.0
CD1 A:TRP548 4.1 37.9 1.0
OD2 A:ASP584 4.2 50.8 1.0
ND2 A:ASN110 4.3 92.6 1.0
NE2 A:HIS520 4.4 45.5 1.0
CB A:ASP207 4.5 79.1 1.0
C A:PHE581 4.6 73.4 1.0
CB A:ASP584 4.6 45.0 1.0
OE1 A:GLU549 4.6 35.3 1.0
CD2 A:PHE581 4.6 79.1 1.0
OH A:TYR108 4.9 86.2 1.0
CD2 A:TRP548 4.9 34.9 1.0
CB A:PHE581 5.0 80.9 1.0

Reference:

M.Rutkiewicz, A.Bujacz, G.Bujacz. Structural Features of Cold-Adapted Dimeric GH2 Beta-D-Galactosidase From Arthrobacter Sp. 32CB. Biochim Biophys Acta V.1867 776 2019PROTEINS Proteom.
ISSN: ISSN 1878-1454
PubMed: 31195142
DOI: 10.1016/J.BBAPAP.2019.06.001
Page generated: Tue Oct 8 09:11:06 2024

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