Sodium in PDB 6guy: Room Temperature Structure of Archaerhodopsin-3 Via Lcp Extruder Using Synchrotron Radiation

The structure of Room Temperature Structure of Archaerhodopsin-3 Via Lcp Extruder Using Synchrotron Radiation, PDB code: 6guy was solved by I.Moraes, P.J.Judge, D.Axford, J.F.Bada Juarez, J.Vinals, A.Watts, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.32 / 2.20
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	46.294, 48.271, 104.902, 90.00, 90.00, 90.00
R / Rfree (%)	22.3 / 25.2

The structure of Room Temperature Structure of Archaerhodopsin-3 Via Lcp Extruder Using Synchrotron Radiation also contains other interesting chemical elements:

Chlorine	(Cl)	3 atoms
Calcium	(Ca)	1 atom

The binding sites of Sodium atom in the Room Temperature Structure of Archaerhodopsin-3 Via Lcp Extruder Using Synchrotron Radiation (pdb code 6guy). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Room Temperature Structure of Archaerhodopsin-3 Via Lcp Extruder Using Synchrotron Radiation, PDB code: 6guy:

Sodium binding site 1 out of 1 in the Room Temperature Structure of Archaerhodopsin-3 Via Lcp Extruder Using Synchrotron Radiation


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Room Temperature Structure of Archaerhodopsin-3 Via Lcp Extruder Using Synchrotron Radiation within 5.0Å range: probe atom residue distance (Å) B Occ A:Na714 b:35.5 occ:1.00 OD1 A:ASP11 2.4 38.2 1.0 OG1 A:THR20 2.6 31.6 1.0 OD1 A:ASP15 2.7 40.2 1.0 N A:LEU13 2.9 34.9 1.0 O A:ARG17 3.1 37.1 1.0 CG2 A:THR20 3.2 33.7 1.0 N A:LEU12 3.3 38.9 1.0 CB A:THR20 3.4 33.9 1.0 CB A:LEU13 3.4 33.8 1.0 CA A:LEU13 3.6 36.0 1.0 CG A:ASP11 3.7 38.8 1.0 C A:ASP11 3.7 38.3 1.0 CG A:ASP15 3.7 40.0 1.0 CA A:ASP11 3.9 39.3 1.0 C A:LEU12 3.9 37.3 1.0 N A:GLY14 4.0 34.6 1.0 CG A:LEU13 4.0 37.0 1.0 CB A:ARG17 4.0 34.5 1.0 C A:ARG17 4.1 36.0 1.0 C A:LEU13 4.1 36.1 1.0 CA A:LEU12 4.1 40.2 1.0 OD2 A:ASP15 4.2 40.5 1.0 N A:ARG17 4.3 34.9 1.0 CA A:ARG17 4.3 38.0 1.0 N A:ASP15 4.3 40.7 1.0 CB A:ASP11 4.4 37.6 1.0 O A:ASP11 4.5 41.2 1.0 CB A:LEU12 4.6 38.4 1.0 CD1 A:LEU13 4.6 37.0 1.0 OD2 A:ASP11 4.6 34.5 1.0 NE A:ARG17 4.7 35.6 1.0 CA A:THR20 4.7 33.8 1.0 NH2 A:ARG17 4.8 32.9 1.0 N A:THR20 4.9 32.9 1.0 O A:TYR10 4.9 38.4 1.0 CB A:ASP15 5.0 35.7 1.0

J.F.Bada Juarez, P.J.Judge, J.Vinals, D.Axford, J.Birch, P.Aller, A.Butryn, R.L.Owen, D.A.Sherrell, J.H.Beale, A.M.Orville, A.Watts, I.Moraes. Room Temperature Structure of Archaerhodopsin-3 Via Lcp Extruder Using Synchrotron Radiation To Be Published.