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Sodium in PDB 6h1z: AFGH61B Wild-Type

Protein crystallography data

The structure of AFGH61B Wild-Type, PDB code: 6h1z was solved by L.Lo Leggio, J.C.N.Poulsen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.43 / 1.57
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 37.670, 43.850, 60.010, 89.62, 108.33, 109.20
R / Rfree (%) 12.9 / 16.7

Other elements in 6h1z:

The structure of AFGH61B Wild-Type also contains other interesting chemical elements:

Copper (Cu) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the AFGH61B Wild-Type (pdb code 6h1z). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the AFGH61B Wild-Type, PDB code: 6h1z:

Sodium binding site 1 out of 1 in 6h1z

Go back to Sodium Binding Sites List in 6h1z
Sodium binding site 1 out of 1 in the AFGH61B Wild-Type


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of AFGH61B Wild-Type within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na306

b:28.7
occ:1.00
OD2 A:ASP131 2.3 15.2 1.0
OD1 A:ASP132 2.6 18.9 1.0
O A:GLU84 2.6 18.4 1.0
ND1 A:HIS87 2.9 10.3 0.5
CG A:ASP131 3.1 12.9 1.0
OD1 A:ASP131 3.2 11.4 1.0
CD2 A:HIS87 3.3 12.7 0.5
CG A:ASP132 3.3 15.4 1.0
CE1 A:HIS87 3.3 11.6 0.5
C A:GLU84 3.4 15.7 1.0
OD2 A:ASP132 3.5 14.5 1.0
CG A:HIS87 3.5 10.7 0.5
CA A:HIS87 3.6 10.1 0.5
N A:HIS87 3.6 10.1 1.0
CA A:HIS87 3.6 10.5 0.5
CA A:GLU84 3.7 16.9 1.0
C A:HIS86 3.7 11.9 1.0
CG A:HIS87 3.7 12.3 0.5
O A:PRO83 3.8 15.1 1.0
NE2 A:HIS87 3.8 14.2 0.5
O A:HIS86 3.9 12.0 1.0
N A:HIS86 4.0 11.2 1.0
NE2 A:HIS87 4.1 10.7 0.5
CB A:HIS87 4.1 10.5 0.5
CD1 A:ILE135 4.2 12.3 1.0
CD2 A:HIS87 4.2 11.3 0.5
CB A:HIS87 4.2 11.4 0.5
N A:ASP132 4.3 11.3 1.0
N A:SER85 4.4 14.6 1.0
C A:SER85 4.4 14.3 1.0
ND1 A:HIS87 4.4 14.0 0.5
CE1 A:HIS87 4.5 12.9 0.5
CA A:HIS86 4.5 11.2 1.0
CA A:ASP132 4.5 11.8 1.0
CB A:ASP131 4.5 12.1 1.0
CB A:ASP132 4.5 12.5 1.0
CG A:GLU84 4.6 27.9 1.0
C A:PRO83 4.6 15.5 1.0
N A:GLU84 4.6 16.1 1.0
C A:ASP131 4.6 10.9 1.0
CD1 A:TRP82 4.7 12.1 1.0
CB A:GLU84 4.7 22.9 1.0
O A:HOH459 4.8 27.3 1.0
C A:HIS87 4.9 10.4 1.0
NE1 A:TRP82 4.9 11.5 1.0
CA A:SER85 4.9 14.5 1.0
O A:SER85 5.0 13.8 1.0

Reference:

L.Lo Leggio, C.D.Weihe, J.N.Poulsen, M.Sweeney, F.Rasmussen, J.Lin, L.De Maria, M.Wogulis. Structure of A Lytic Polysaccharide Monooxygenase From Aspergillus Fumigatus and An Engineered Thermostable Variant. Carbohydr. Res. V. 469 55 2018.
ISSN: ISSN 1873-426X
PubMed: 30296642
DOI: 10.1016/J.CARRES.2018.08.009
Page generated: Tue Dec 15 12:18:53 2020

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