Sodium in PDB 6go6: Tdt Chimera (LOOP1 of Pol Mu) - Ternary Complex with Downstream Dsdna

Enzymatic activity of Tdt Chimera (LOOP1 of Pol Mu) - Ternary Complex with Downstream Dsdna

All present enzymatic activity of Tdt Chimera (LOOP1 of Pol Mu) - Ternary Complex with Downstream Dsdna:
2.7.7.31; 2.7.7.7;

Protein crystallography data

The structure of Tdt Chimera (LOOP1 of Pol Mu) - Ternary Complex with Downstream Dsdna, PDB code: 6go6 was solved by J.Loc'h, C.A.Gerodimos, S.Rosario, M.R.Lieber, M.Delarue, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	47.46 / 2.09
*Space group*	P 2₁ 2₁ 2
*Cell size a, b, c (Å), α, β, γ (°)*	86.420, 189.830, 46.480, 90.00, 90.00, 90.00
*R / R_free (%)*	20.2 / 23.2

Other elements in 6go6:

The structure of Tdt Chimera (LOOP1 of Pol Mu) - Ternary Complex with Downstream Dsdna also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Tdt Chimera (LOOP1 of Pol Mu) - Ternary Complex with Downstream Dsdna (pdb code 6go6). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Tdt Chimera (LOOP1 of Pol Mu) - Ternary Complex with Downstream Dsdna, PDB code: 6go6:

Sodium binding site 1 out of 1 in 6go6

Go back to

Sodium Binding Sites List in 6go6

Sodium binding site 1 out of 1 in the Tdt Chimera (LOOP1 of Pol Mu) - Ternary Complex with Downstream Dsdna

Mono view

Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Tdt Chimera (LOOP1 of Pol Mu) - Ternary Complex with Downstream Dsdna within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Na601 b:68.0 occ:1.00	O	A:HOH841	2.6	59.0	1.0
	O	A:THR253	2.6	51.4	1.0
	O	A:VAL258	2.9	50.3	1.0
	O	A:HOH912	3.0	75.9	1.0
	O	A:VAL255	3.5	47.6	1.0
	C	A:THR253	3.6	50.9	1.0
	C	A:VAL258	3.9	50.9	1.0
	CA	A:THR253	3.9	47.1	1.0
	CB	A:THR253	4.1	53.4	1.0
	N	A:VAL258	4.1	45.5	1.0
	O	A:HOH945	4.2	74.0	1.0
	O	A:HOH843	4.3	89.7	1.0
	C	A:VAL255	4.4	49.2	1.0
	CA	A:VAL258	4.5	45.0	1.0
	N	A:GLY257	4.5	45.0	1.0
	N	A:SER254	4.8	48.0	1.0
	CA	A:PHE256	4.8	46.2	1.0
	CG2	A:THR253	4.9	51.0	1.0
	CB	A:VAL258	4.9	47.6	1.0
	N	A:GLY259	4.9	49.4	1.0
	N	A:PHE256	5.0	46.6	1.0
	N	A:VAL255	5.0	45.9	1.0

Reference:

J.Loc'h, C.A.Gerodimos, S.Rosario, M.R.Lieber, M.Delarue. Tdt Chimera (LOOP1 of Pol Mu) - Ternary Complex with Downstream Dsdna To Be Published.

Page generated: Tue Oct 8 09:06:32 2024

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