Sodium in PDB, part 177 (files: 7041-7080),
PDB 5ulg-5v1n
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 7041-7080 (PDB 5ulg-5v1n).
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5ulg (Na: 2) - Crystal Structure of RPE65 in Complex with Mb-008 and Palmitate
Other atoms:
Fe (2);
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5uln (Na: 2) - Synthesis of Novel Seleno Ureido Containing Compounds As Slc-0111 Analogs. Investigations on Carbonic Anhydrases Activity, Glutathione Peroxidase and X-Ray Crystallography
Other atoms:
F (1);
Zn (1);
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5ulp (Na: 2) - Structure of the NS5 Methyltransferase From Zika Bound to MS2042
Other atoms:
F (2);
Cl (4);
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5ult (Na: 1) - Hiv-1 Wild Type Protease with Grl-100-13A (A Crown-Like Oxotricyclic Core As the P2-Ligand with the Sulfonamide Isostere As the P2' Group)
Other atoms:
Cl (2);
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5umn (Na: 1) - Crystal Structure of C05 Vpgsgw Mutant Bound to H3 Influenza Hemagglutinin, HA1 Subunit
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5uof (Na: 2) - Crystal Structure of Alpha,Alpha-Trehalose 6-Phosphate Sythase From Burkholderia Multivorans
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5uos (Na: 1) - Crystal Structure of Cblc (Mmachc) (1-238), A Human B12 Processing Enzyme, Complexed with An Antivitamin B12
Other atoms:
F (2);
Co (1);
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5uov (Na: 1) - Hiv-1 Wild Type Protease with Grl-1118A , An Isophthalamide-Derived P2-P3 Ligand with the Sulfonamide Isostere As the P2' Group
Other atoms:
Cl (3);
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5up8 (Na: 1) - Crystal Structure of the Zn-Bound Human Heavy-Chain Variant 122H-Delta C-Star with Para-Benzenedihydroxamate
Other atoms:
Zn (3);
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5ups (Na: 2) - Acyl-Coa Synthetase PTMA2 From Streptomyces Platensis in Complex with SBNP663 Ligand
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5upz (Na: 2) - Hiv-1 Wild Type Protease with Grl-0518A , An Isophthalamide-Derived P2-P3 Ligand with the Para-Hydoxymethyl Sulfonamide Isostere As the P2' Group
Other atoms:
Cl (3);
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5uq6 (Na: 1) - Pig Purple Acid Phosphatase Complexed with Phosphate in Two Coordination Modes Along with A Bridging Hydroxide Ion
Other atoms:
Fe (2);
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5uqa (Na: 6) - Insulin with Proline Analog Fzp at Position B28 in the R6 State
Other atoms:
F (6);
Zn (2);
Cl (2);
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5uqr (Na: 3) - Crystal Structure of 2-Methylcitrate Synthase From Aspergillus Fumigatus
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5ur0 (Na: 4) - Crystallographic Structure of Glyceraldehyde-3-Phosphate Dehydrogenase From Naegleria Gruberi
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5urb (Na: 2) - Crystal Structure of Methionyl-Trna Synthetase (Metrs) From Acinetobacter Baumannii with Bound L-Methionine
Other atoms:
Zn (2);
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5urt (Na: 1) - Insulin with Proline Analog Dhp at Position B28 in the T2 State
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5usn (Na: 1) - Crystal Structure of Schizosaccharomyces Pombe POT1PC Bound to Ssrna/Ssdna Chimera (Rgrgrutacggt)
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5usp (Na: 1) - Insulin with Proline Analog Pip at Position B28 in the T2 State
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5usv (Na: 1) - Insulin with Proline Analog Azep at Position B28 in the T2 State
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5uvj (Na: 1) - Serial Millisecond Crystallography of Membrane and Soluble Protein Micro-Crystals Using Synchrotron Radiation
Other atoms:
Cl (3);
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5uxy (Na: 1) - The Crystal Structure of A Degv Family Protein From Eubacterium Eligens Loaded with Heptadecanoic Acid to 1.80 Angstrom Resolution (Alternative Refinement of Pdb 3FDJ with Heptadecanoic Acid)
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5uzv (Na: 1) - Crystal Structure of Human Exonuclease 1 EXO1 (Wt) in Complex with 5' Recessed-End Dna (Ri)
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5v01 (Na: 2) - Crystal Structure of the Competence Damage-Inducible Protein A (Coma) From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
Other atoms:
Cl (10);
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5v04 (Na: 1) - Crystal Structure of Human Exonuclease 1 EXO1 (Wt) in Complex with 5' Recessed-End Dna (Rii)
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5v05 (Na: 1) - Crystal Structure of Human Exonuclease 1 EXO1 (Wt) in Complex with 5' Recessed-End Dna (Riii)
Other atoms:
Mn (2);
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5v06 (Na: 1) - Crystal Structure of Human Exonuclease 1 EXO1 (Wt) in Complex with 5' Recessed-End Dna (Riv)
Other atoms:
Mn (3);
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5v07 (Na: 1) - Crystal Structure of Human Exonuclease 1 EXO1 (D173A) in Complex with 5' Recessed-End Dna (Rv)
Other atoms:
Mn (4);
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5v08 (Na: 1) - Crystal Structure of Human Exonuclease 1 EXO1 (D173A) in Complex with 5' Recessed-End Dna (Rvi)
Other atoms:
Mg (3);
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5v09 (Na: 1) - Crystal Structure of Human Exonuclease 1 EXO1 (D225A) in Complex with 5' Recessed-End Dna (Rvii)
Other atoms:
Mn (5);
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5v0a (Na: 1) - Crystal Structure of Human Exonuclease 1 EXO1 (D225A) in Complex with 5' Recessed-End Dna (Rviii)
Other atoms:
Mn (6);
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5v0b (Na: 1) - Crystal Structure of Human Exonuclease 1 EXO1 (Wt) in Complex with 5' Recessed-End Dna (Rix)
Other atoms:
Mn (2);
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5v0c (Na: 1) - Crystal Structure of Human Exonuclease 1 EXO1 (Wt) in Complex with 5' Flap Dna (F2I)
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5v0d (Na: 1) - Crystal Structure of Human Exonuclease 1 EXO1 (Wt) in Complex with 5' Flap Dna (F2II)
Other atoms:
Mg (2);
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5v0e (Na: 1) - Crystal Structure of Human Exonuclease 1 EXO1 (Wt) in Complex with 5' Flap Dna (F5I)
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5v0p (Na: 2) - Crystal Structure of Beta-Ketoacyl-Acp Synthase III-2 (FABH2) (C113A) From Vibrio Cholerae Co-Crystallized with Octanoyl-Coa
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5v1g (Na: 1) - Dna Polymerase Beta Binary Complex with 8-Oxog at the Primer Terminus
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5v1i (Na: 3) - Dna Polymerase Beta Ternary Product Complex with 8-Oxog:C and Inserted Dctp
Other atoms:
Mg (2);
Cl (4);
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5v1j (Na: 2) - Dna Polymerase Beta Open Product Complex with 8-Oxog:C and Inserted Dctp
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5v1n (Na: 1) - Dna Polymerase Beta Substrate Complex with 8-Oxog:A at the Primer Terminus and Incoming Dctp
Other atoms:
Ca (2);
Cl (2);
Page generated: Wed Nov 4 05:35:47 2020
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