Sodium in PDB 5uof: Crystal Structure of Alpha,Alpha-Trehalose 6-Phosphate Sythase From Burkholderia Multivorans

All present enzymatic activity of Crystal Structure of Alpha,Alpha-Trehalose 6-Phosphate Sythase From Burkholderia Multivorans:
2.4.1.15;

The structure of Crystal Structure of Alpha,Alpha-Trehalose 6-Phosphate Sythase From Burkholderia Multivorans, PDB code: 5uof was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 1.70
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	117.580, 128.920, 85.960, 90.00, 90.00, 90.00
R / Rfree (%)	15.8 / 18.5

The binding sites of Sodium atom in the Crystal Structure of Alpha,Alpha-Trehalose 6-Phosphate Sythase From Burkholderia Multivorans (pdb code 5uof). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of Alpha,Alpha-Trehalose 6-Phosphate Sythase From Burkholderia Multivorans, PDB code: 5uof:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of Alpha,Alpha-Trehalose 6-Phosphate Sythase From Burkholderia Multivorans


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Alpha,Alpha-Trehalose 6-Phosphate Sythase From Burkholderia Multivorans within 5.0Å range: probe atom residue distance (Å) B Occ A:Na501 b:14.9 occ:1.00 O A:SER362 2.3 15.0 1.0 OE1 A:GLN385 2.3 12.2 1.0 O A:ARG360 2.4 13.7 1.0 O A:HOH804 2.4 14.3 1.0 O A:HOH743 2.5 21.4 1.0 C A:ARG360 3.3 12.3 1.0 CD A:GLN385 3.5 14.1 1.0 C A:SER362 3.5 15.9 1.0 O A:PHE359 3.7 12.6 1.0 N A:GLY391 3.7 10.2 1.0 O A:HOH815 3.9 32.2 1.0 N A:SER362 3.9 11.7 1.0 C A:MET361 4.0 13.6 1.0 NE2 A:GLN385 4.0 9.3 1.0 O A:HOH992 4.0 27.6 1.0 O A:ASP389 4.0 14.1 1.0 CA A:ARG360 4.0 12.6 1.0 CA A:GLY391 4.1 10.1 1.0 O A:MET361 4.2 15.8 1.0 N A:MET361 4.3 11.4 1.0 CA A:SER362 4.3 15.1 1.0 CA A:MET361 4.5 15.1 0.3 N A:GLN363 4.5 10.7 1.0 C A:PRO390 4.5 13.5 1.0 CA A:MET361 4.6 15.3 0.7 OH A:TYR381 4.6 12.5 1.0 OG A:SER362 4.7 14.5 1.0 CA A:GLN363 4.7 12.8 1.0 CG A:GLN385 4.7 10.1 1.0 C A:PHE359 4.7 11.8 1.0 O A:HOH834 4.7 35.6 1.0 CA A:PRO390 4.8 12.1 1.0 CB A:GLN385 4.9 8.4 1.0 CA A:GLN385 4.9 10.0 1.0 N A:ARG360 4.9 10.3 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of Alpha,Alpha-Trehalose 6-Phosphate Sythase From Burkholderia Multivorans


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Alpha,Alpha-Trehalose 6-Phosphate Sythase From Burkholderia Multivorans within 5.0Å range: probe atom residue distance (Å) B Occ B:Na502 b:13.4 occ:1.00 OE1 B:GLN385 2.3 11.6 1.0 O B:SER362 2.3 13.8 1.0 O B:ARG360 2.4 12.3 1.0 O B:HOH821 2.4 15.8 1.0 O B:HOH715 2.5 14.1 1.0 C B:ARG360 3.3 14.9 1.0 CD B:GLN385 3.4 11.8 1.0 C B:SER362 3.5 12.6 1.0 N B:GLY391 3.6 12.1 1.0 O B:PHE359 3.6 10.6 1.0 O B:HOH1021 3.9 18.9 1.0 CA B:ARG360 3.9 13.8 1.0 O B:ASP389 4.0 14.9 1.0 C B:MET361 4.0 15.1 1.0 NE2 B:GLN385 4.0 10.9 1.0 CA B:GLY391 4.0 10.2 1.0 N B:SER362 4.1 11.5 1.0 O B:HOH804 4.1 22.8 1.0 O B:MET361 4.2 12.7 1.0 N B:MET361 4.3 13.2 1.0 CA B:SER362 4.4 10.4 1.0 C B:PRO390 4.4 17.3 1.0 N B:GLN363 4.5 10.3 1.0 CA B:MET361 4.5 13.6 1.0 OH B:TYR381 4.6 12.6 1.0 C B:PHE359 4.6 10.7 1.0 OG B:SER362 4.6 12.7 1.0 CG B:GLN385 4.6 12.6 1.0 CA B:GLN363 4.7 12.0 1.0 CA B:PRO390 4.7 9.9 1.0 N B:ARG360 4.8 11.6 1.0 CB B:GLN385 4.9 10.6 1.0 CA B:GLN385 4.9 12.2 1.0

R.M.Irwin, D.M.Dranow, D.D.Lorimer, T.E.Edwards. Crystal Structure of Alpha,Alpha-Trehalose 6-Phosphate Sythase From Burkholderia Multivorans To Be Published.