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Sodium in PDB 5uof: Crystal Structure of Alpha,Alpha-Trehalose 6-Phosphate Sythase From Burkholderia Multivorans

Enzymatic activity of Crystal Structure of Alpha,Alpha-Trehalose 6-Phosphate Sythase From Burkholderia Multivorans

All present enzymatic activity of Crystal Structure of Alpha,Alpha-Trehalose 6-Phosphate Sythase From Burkholderia Multivorans:
2.4.1.15;

Protein crystallography data

The structure of Crystal Structure of Alpha,Alpha-Trehalose 6-Phosphate Sythase From Burkholderia Multivorans, PDB code: 5uof was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.70
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 117.580, 128.920, 85.960, 90.00, 90.00, 90.00
R / Rfree (%) 15.8 / 18.5

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Alpha,Alpha-Trehalose 6-Phosphate Sythase From Burkholderia Multivorans (pdb code 5uof). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of Alpha,Alpha-Trehalose 6-Phosphate Sythase From Burkholderia Multivorans, PDB code: 5uof:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in 5uof

Go back to Sodium Binding Sites List in 5uof
Sodium binding site 1 out of 2 in the Crystal Structure of Alpha,Alpha-Trehalose 6-Phosphate Sythase From Burkholderia Multivorans


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Alpha,Alpha-Trehalose 6-Phosphate Sythase From Burkholderia Multivorans within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na501

b:14.9
occ:1.00
O A:SER362 2.3 15.0 1.0
OE1 A:GLN385 2.3 12.2 1.0
O A:ARG360 2.4 13.7 1.0
O A:HOH804 2.4 14.3 1.0
O A:HOH743 2.5 21.4 1.0
C A:ARG360 3.3 12.3 1.0
CD A:GLN385 3.5 14.1 1.0
C A:SER362 3.5 15.9 1.0
O A:PHE359 3.7 12.6 1.0
N A:GLY391 3.7 10.2 1.0
O A:HOH815 3.9 32.2 1.0
N A:SER362 3.9 11.7 1.0
C A:MET361 4.0 13.6 1.0
NE2 A:GLN385 4.0 9.3 1.0
O A:HOH992 4.0 27.6 1.0
O A:ASP389 4.0 14.1 1.0
CA A:ARG360 4.0 12.6 1.0
CA A:GLY391 4.1 10.1 1.0
O A:MET361 4.2 15.8 1.0
N A:MET361 4.3 11.4 1.0
CA A:SER362 4.3 15.1 1.0
CA A:MET361 4.5 15.1 0.3
N A:GLN363 4.5 10.7 1.0
C A:PRO390 4.5 13.5 1.0
CA A:MET361 4.6 15.3 0.7
OH A:TYR381 4.6 12.5 1.0
OG A:SER362 4.7 14.5 1.0
CA A:GLN363 4.7 12.8 1.0
CG A:GLN385 4.7 10.1 1.0
C A:PHE359 4.7 11.8 1.0
O A:HOH834 4.7 35.6 1.0
CA A:PRO390 4.8 12.1 1.0
CB A:GLN385 4.9 8.4 1.0
CA A:GLN385 4.9 10.0 1.0
N A:ARG360 4.9 10.3 1.0

Sodium binding site 2 out of 2 in 5uof

Go back to Sodium Binding Sites List in 5uof
Sodium binding site 2 out of 2 in the Crystal Structure of Alpha,Alpha-Trehalose 6-Phosphate Sythase From Burkholderia Multivorans


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Alpha,Alpha-Trehalose 6-Phosphate Sythase From Burkholderia Multivorans within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na502

b:13.4
occ:1.00
OE1 B:GLN385 2.3 11.6 1.0
O B:SER362 2.3 13.8 1.0
O B:ARG360 2.4 12.3 1.0
O B:HOH821 2.4 15.8 1.0
O B:HOH715 2.5 14.1 1.0
C B:ARG360 3.3 14.9 1.0
CD B:GLN385 3.4 11.8 1.0
C B:SER362 3.5 12.6 1.0
N B:GLY391 3.6 12.1 1.0
O B:PHE359 3.6 10.6 1.0
O B:HOH1021 3.9 18.9 1.0
CA B:ARG360 3.9 13.8 1.0
O B:ASP389 4.0 14.9 1.0
C B:MET361 4.0 15.1 1.0
NE2 B:GLN385 4.0 10.9 1.0
CA B:GLY391 4.0 10.2 1.0
N B:SER362 4.1 11.5 1.0
O B:HOH804 4.1 22.8 1.0
O B:MET361 4.2 12.7 1.0
N B:MET361 4.3 13.2 1.0
CA B:SER362 4.4 10.4 1.0
C B:PRO390 4.4 17.3 1.0
N B:GLN363 4.5 10.3 1.0
CA B:MET361 4.5 13.6 1.0
OH B:TYR381 4.6 12.6 1.0
C B:PHE359 4.6 10.7 1.0
OG B:SER362 4.6 12.7 1.0
CG B:GLN385 4.6 12.6 1.0
CA B:GLN363 4.7 12.0 1.0
CA B:PRO390 4.7 9.9 1.0
N B:ARG360 4.8 11.6 1.0
CB B:GLN385 4.9 10.6 1.0
CA B:GLN385 4.9 12.2 1.0

Reference:

R.M.Irwin, D.M.Dranow, D.D.Lorimer, T.E.Edwards. Crystal Structure of Alpha,Alpha-Trehalose 6-Phosphate Sythase From Burkholderia Multivorans To Be Published.
Page generated: Tue Dec 15 11:42:49 2020

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