Atomistry » Sodium » PDB 5uju-5v0c » 5usn
Atomistry »
  Sodium »
    PDB 5uju-5v0c »
      5usn »

Sodium in PDB 5usn: Crystal Structure of Schizosaccharomyces Pombe POT1PC Bound to Ssrna/Ssdna Chimera (Rgrgrutacggt)

Protein crystallography data

The structure of Crystal Structure of Schizosaccharomyces Pombe POT1PC Bound to Ssrna/Ssdna Chimera (Rgrgrutacggt), PDB code: 5usn was solved by N.R.Lloyd, D.S.Wuttke, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.34 / 1.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 41.640, 59.800, 66.080, 90.00, 90.00, 90.00
R / Rfree (%) 18.3 / 22.4

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Schizosaccharomyces Pombe POT1PC Bound to Ssrna/Ssdna Chimera (Rgrgrutacggt) (pdb code 5usn). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Schizosaccharomyces Pombe POT1PC Bound to Ssrna/Ssdna Chimera (Rgrgrutacggt), PDB code: 5usn:

Sodium binding site 1 out of 1 in 5usn

Go back to Sodium Binding Sites List in 5usn
Sodium binding site 1 out of 1 in the Crystal Structure of Schizosaccharomyces Pombe POT1PC Bound to Ssrna/Ssdna Chimera (Rgrgrutacggt)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Schizosaccharomyces Pombe POT1PC Bound to Ssrna/Ssdna Chimera (Rgrgrutacggt) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na101

b:35.1
occ:1.00
HO2' B:G1 2.2 46.5 1.0
O B:HOH222 2.6 30.1 1.0
O2' B:G1 2.7 38.7 1.0
O B:HOH204 2.8 36.3 1.0
O B:HOH232 3.2 43.1 1.0
H1' B:G1 3.8 38.1 1.0
C2' B:G1 3.9 40.3 1.0
O3' B:G1 4.1 37.2 1.0
H8 B:G1 4.2 34.7 1.0
C1' B:G1 4.3 31.8 1.0
H2' B:G1 4.6 48.4 1.0
C3' B:G1 4.6 34.0 1.0
OP2 B:G2 4.7 32.4 1.0
C8 B:G1 4.8 28.9 1.0
N7 B:G2 4.8 23.9 1.0
N9 B:G1 4.9 30.1 1.0
H8 B:G2 4.9 35.7 1.0

Reference:

N.R.Lloyd, D.S.Wuttke. Discrimination Against Rna Backbones By A Ssdna Binding Protein. Structure V. 26 722 2018.
ISSN: ISSN 1878-4186
PubMed: 29681468
DOI: 10.1016/J.STR.2018.03.016
Page generated: Tue Dec 15 11:43:14 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy