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Sodium in PDB 5uvj: Serial Millisecond Crystallography of Membrane and Soluble Protein Micro-Crystals Using Synchrotron Radiation

Enzymatic activity of Serial Millisecond Crystallography of Membrane and Soluble Protein Micro-Crystals Using Synchrotron Radiation

All present enzymatic activity of Serial Millisecond Crystallography of Membrane and Soluble Protein Micro-Crystals Using Synchrotron Radiation:
3.2.1.17;

Protein crystallography data

The structure of Serial Millisecond Crystallography of Membrane and Soluble Protein Micro-Crystals Using Synchrotron Radiation, PDB code: 5uvj was solved by J.M.Martin-Garcia, C.E.Conrad, G.Nelson, N.Stander, N.A.Zatsepin, J.Zook, L.Zhu, J.Geiger, E.Chun, D.Kissick, M.C.Hilgart, C.Ogata, A.Ishchenko, N.Nagaratnam, S.Roy-Chowdhury, J.Coe, G.Subramanian, A.Schaffer, D.James, G.Ketawala, N.Venugopalan, S.Xu, S.Corcoran, D.Ferguson, U.Weierstall, J.C.H.Spence, V.Cherezov, P.Fromme, R.F.Fischetti, W.Liu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.00 / 2.05
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.100, 79.100, 38.000, 90.00, 90.00, 90.00
R / Rfree (%) 22.9 / 26.8

Other elements in 5uvj:

The structure of Serial Millisecond Crystallography of Membrane and Soluble Protein Micro-Crystals Using Synchrotron Radiation also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Serial Millisecond Crystallography of Membrane and Soluble Protein Micro-Crystals Using Synchrotron Radiation (pdb code 5uvj). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Serial Millisecond Crystallography of Membrane and Soluble Protein Micro-Crystals Using Synchrotron Radiation, PDB code: 5uvj:

Sodium binding site 1 out of 1 in 5uvj

Go back to Sodium Binding Sites List in 5uvj
Sodium binding site 1 out of 1 in the Serial Millisecond Crystallography of Membrane and Soluble Protein Micro-Crystals Using Synchrotron Radiation


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Serial Millisecond Crystallography of Membrane and Soluble Protein Micro-Crystals Using Synchrotron Radiation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na204

b:36.8
occ:1.00
 O A:SER60 2.4 30.0 1.0
O A:ARG73 2.4 43.0 1.0
O A:CYS64 2.5 28.1 1.0
OG A:SER72 2.5 37.1 1.0
O A:HOH318 2.7 31.5 1.0
O A:HOH310 2.7 34.2 1.0
CB A:SER72 3.2 39.8 1.0
C A:ARG73 3.4 42.3 1.0
C A:CYS64 3.5 28.0 1.0
C A:SER60 3.5 30.9 1.0
N A:ARG73 3.7 42.5 1.0
C A:SER72 3.9 41.6 1.0
CA A:ASN65 4.0 31.0 1.0
N A:ASN65 4.2 30.3 1.0
CA A:ARG73 4.2 44.4 1.0
CA A:SER72 4.2 42.5 1.0
CA A:SER60 4.3 29.4 1.0
N A:ASN74 4.3 40.6 1.0
N A:CYS64 4.4 27.6 1.0
C A:ARG61 4.4 40.9 1.0
O A:SER72 4.4 34.3 1.0
O A:ARG61 4.5 40.1 1.0
CB A:SER60 4.5 28.8 1.0
CA A:ASN74 4.5 37.7 1.0
N A:ARG61 4.6 35.3 1.0
CA A:CYS64 4.6 27.3 1.0
N A:TRP62 4.7 40.0 1.0
CB A:ASN74 4.7 35.9 1.0
CB A:THR69 4.7 34.2 1.0
CL A:CL201 4.7 54.7 1.0
CB A:ASN65 4.8 31.4 1.0
CA A:ARG61 4.8 42.8 1.0
OD1 A:ASN65 4.8 35.6 1.0
N A:ASP66 4.9 28.9 1.0
O A:THR69 4.9 40.9 1.0
C A:ASN65 5.0 29.1 1.0
C A:TRP62 5.0 34.0 1.0

Reference:

J.M.Martin-Garcia, C.E.Conrad, G.Nelson, N.Stander, N.A.Zatsepin, J.Zook, L.Zhu, J.Geiger, E.Chun, D.Kissick, M.C.Hilgart, C.Ogata, A.Ishchenko, N.Nagaratnam, S.Roy-Chowdhury, J.Coe, G.Subramanian, A.Schaffer, D.James, G.Ketwala, N.Venugopalan, S.Xu, S.Corcoran, D.Ferguson, U.Weierstall, J.C.H.Spence, V.Cherezov, P.Fromme, R.F.Fischetti, W.Liu. Serial Millisecond Crystallography of Membrane and Soluble Protein Microcrystals Using Synchrotron Radiation. Iucrj V. 4 439 2017.
ISSN: ESSN 2052-2525
PubMed: 28875031
DOI: 10.1107/S205225251700570X
Page generated: Tue Oct 8 00:41:01 2024

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