Sodium in PDB 5uxy: The Crystal Structure of A Degv Family Protein From Eubacterium Eligens Loaded with Heptadecanoic Acid to 1.80 Angstrom Resolution (Alternative Refinement of Pdb 3FDJ with Heptadecanoic Acid)

The structure of The Crystal Structure of A Degv Family Protein From Eubacterium Eligens Loaded with Heptadecanoic Acid to 1.80 Angstrom Resolution (Alternative Refinement of Pdb 3FDJ with Heptadecanoic Acid), PDB code: 5uxy was solved by M.G.Cuypers, M.Ericson, C.Subramanian, S.W.White, C.O.Rock, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.91 / 1.80
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	57.445, 57.445, 186.558, 90.00, 90.00, 90.00
R / Rfree (%)	15.3 / 19.6

The binding sites of Sodium atom in the The Crystal Structure of A Degv Family Protein From Eubacterium Eligens Loaded with Heptadecanoic Acid to 1.80 Angstrom Resolution (Alternative Refinement of Pdb 3FDJ with Heptadecanoic Acid) (pdb code 5uxy). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the The Crystal Structure of A Degv Family Protein From Eubacterium Eligens Loaded with Heptadecanoic Acid to 1.80 Angstrom Resolution (Alternative Refinement of Pdb 3FDJ with Heptadecanoic Acid), PDB code: 5uxy:

Sodium binding site 1 out of 1 in the The Crystal Structure of A Degv Family Protein From Eubacterium Eligens Loaded with Heptadecanoic Acid to 1.80 Angstrom Resolution (Alternative Refinement of Pdb 3FDJ with Heptadecanoic Acid)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Crystal Structure of A Degv Family Protein From Eubacterium Eligens Loaded with Heptadecanoic Acid to 1.80 Angstrom Resolution (Alternative Refinement of Pdb 3FDJ with Heptadecanoic Acid) within 5.0Å range: probe atom residue distance (Å) B Occ A:Na301 b:24.1 occ:1.00 O A:HOH651 2.3 29.5 1.0 O A:HOH631 2.3 32.0 1.0 O A:ILE181 2.4 16.8 1.0 O A:ALA176 2.5 23.8 1.0 O A:LYS157 2.6 15.8 1.0 O A:VAL178 3.0 19.6 1.0 O A:HOH440 3.2 30.0 1.0 C A:ALA176 3.4 22.5 1.0 C A:ILE181 3.5 19.2 1.0 C A:LYS157 3.7 16.3 1.0 N A:ILE181 3.7 17.2 1.0 CA A:ALA176 3.7 23.4 1.0 CB A:ALA176 4.0 19.5 1.0 C A:VAL178 4.1 24.8 1.0 O A:HOH570 4.1 29.1 1.0 CA A:LYS157 4.1 12.4 1.0 CA A:ILE181 4.1 14.0 1.0 N A:GLY180 4.2 21.4 1.0 O A:HOH735 4.2 42.3 1.0 CB A:LYS157 4.4 12.2 1.0 CB A:ILE181 4.5 18.5 1.0 N A:SER182 4.6 12.9 1.0 N A:GLU177 4.6 23.1 1.0 N A:VAL178 4.6 18.1 1.0 C A:GLY180 4.6 20.7 1.0 CA A:LEU179 4.7 24.5 1.0 C A:LEU179 4.8 23.7 1.0 N A:LEU179 4.8 23.5 1.0 C A:GLU177 4.8 28.8 1.0 N A:SER158 4.8 12.2 1.0 CA A:GLY180 4.9 21.2 1.0 CA A:SER182 4.9 13.6 1.0

M.G.Cuypers, M.Ericson, C.Subramanian, T.C.Broussard, D.J.Miller, S.W.White, C.O.Rock. The Crystal Structure of the Staphylococcus Aureus Fatty Acid Kinase (Fak) B1 Protein Loaded with Palmitic Acid to 1.83 Angstroem Resolution J.Biol.Chem. 2018.
ISSN: ESSN 1083-351X