Sodium in PDB 5umn: Crystal Structure of C05 Vpgsgw Mutant Bound to H3 Influenza Hemagglutinin, HA1 Subunit

The structure of Crystal Structure of C05 Vpgsgw Mutant Bound to H3 Influenza Hemagglutinin, HA1 Subunit, PDB code: 5umn was solved by N.C.Wu, I.A.Wilson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	88.34 / 1.97
Space group	P 43
Cell size a, b, c (Å), α, β, γ (°)	88.344, 88.344, 255.038, 90.00, 90.00, 90.00
R / Rfree (%)	18.1 / 20.8

The binding sites of Sodium atom in the Crystal Structure of C05 Vpgsgw Mutant Bound to H3 Influenza Hemagglutinin, HA1 Subunit (pdb code 5umn). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of C05 Vpgsgw Mutant Bound to H3 Influenza Hemagglutinin, HA1 Subunit, PDB code: 5umn:

Sodium binding site 1 out of 1 in the Crystal Structure of C05 Vpgsgw Mutant Bound to H3 Influenza Hemagglutinin, HA1 Subunit


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of C05 Vpgsgw Mutant Bound to H3 Influenza Hemagglutinin, HA1 Subunit within 5.0Å range: probe atom residue distance (Å) B Occ B:Na406 b:46.3 occ:1.00 OG C:SER100D 2.1 40.6 1.0 OE2 B:GLU190 2.3 34.2 1.0 OG B:SER228 2.5 31.5 1.0 CB C:SER100D 3.1 39.0 1.0 CB B:SER228 3.3 28.8 1.0 CA C:SER100D 3.3 38.5 1.0 CE1 B:HIS183 3.3 22.9 1.0 CD B:GLU190 3.3 37.0 1.0 CA B:PRO185 3.4 27.5 1.0 NE2 B:HIS183 3.5 22.9 1.0 N B:SER186 3.7 30.2 1.0 CB B:PRO185 3.8 27.8 1.0 O C:SER100D 3.9 36.6 1.0 CB B:GLU190 4.1 33.1 1.0 C B:PRO185 4.1 28.6 1.0 C C:SER100D 4.1 36.5 1.0 CG B:GLU190 4.1 36.0 1.0 OE1 B:GLU190 4.2 40.0 1.0 OH B:TYR98 4.2 22.6 1.0 O C:HOH408 4.4 42.5 1.0 N C:SER100D 4.4 39.3 1.0 N B:PRO185 4.4 26.1 1.0 O B:HIS184 4.5 24.8 1.0 ND1 B:HIS183 4.6 22.6 1.0 O C:GLY100C 4.6 42.9 1.0 CG B:PRO185 4.6 27.0 1.0 CA B:SER228 4.7 27.7 1.0 CD1 B:LEU194 4.8 24.1 1.0 CD2 B:HIS183 4.8 22.1 1.0 C B:HIS184 4.9 24.7 1.0 C C:GLY100C 4.9 41.7 1.0 CA B:SER186 5.0 31.4 1.0 CB B:SER186 5.0 32.9 1.0

N.C.Wu, G.Grande, H.L.Turner, A.B.Ward, J.Xie, R.A.Lerner, I.A.Wilson. In Vitro Evolution of An Influenza Broadly Neutralizing Antibody Is Modulated By Hemagglutinin Receptor Specificity. Nat Commun V. 8 15371 2017.
ISSN: ESSN 2041-1723
PubMed: 28504265
DOI: 10.1038/NCOMMS15371