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Sodium in PDB, part 149 (files: 5921-5960), PDB 5i8g-5imc

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 5921-5960 (PDB 5i8g-5imc).
  1. 5i8g (Na: 1) - Cbp in Complex with CPD637 ((R)-4-Methyl-6-(1-Methyl-3-(1-Methyl-1H- Pyrazol-4-Yl)-1H-Indazol-5-Yl)-1,3,4,5-Tetrahydro-2H-Benzo[B][1, 4]Diazepin-2-One)
    Other atoms: Zn (3);
  2. 5i8u (Na: 2) - Crystal Structure of the RV1700 (Mt Adprase) E142Q Mutant
  3. 5i96 (Na: 2) - Crystal Structure of Human Mitochondrial Isocitrate Dehydrogenase (IDH2) R140Q Mutant Homodimer in Complex with Ag-221 (Enasidenib) Inhibitor.
    Other atoms: F (12); Ca (2);
  4. 5i9b (Na: 1) - Caspase 3 V266A
  5. 5iaj (Na: 1) - Caspase 3 V266L
  6. 5iak (Na: 1) - Caspase 3 V266S
  7. 5ian (Na: 1) - Caspase 3 V266N
  8. 5iar (Na: 1) - Caspase 3 V266W
  9. 5ias (Na: 1) - Caspase 3 V266Y
  10. 5ibc (Na: 1) - Caspase 3 V266I
    Other atoms: Cl (1);
  11. 5ibw (Na: 1) - Complex of Mlcc Bound to the Tandem Iq Motif of Myoc
  12. 5ibx (Na: 13) - 1.65 Angstrom Crystal Structure of Triosephosphate Isomerase (Tim) From Streptococcus Pneumoniae
  13. 5icc (Na: 2) - Crystal Structure of (S)-Norcoclaurine 6-O-Methyltransferase with S- Adenosyl-L-Homocysteine
    Other atoms: K (2);
  14. 5icf (Na: 1) - Crystal Structure of (S)-Norcoclaurine 6-O-Methyltransferase with S- Adenosyl-L-Homocysteine and Sanguinarine
    Other atoms: K (2);
  15. 5icm (Na: 1) - 17BETA-Hydroxysteroid Dehydrogenase Type 14 in Complex with A Non- Steroidal Inhibitor
    Other atoms: F (1);
  16. 5idd (Na: 2) - Comment on S. W. M. Tanley and J. R. Helliwell Structural Dynamics of Cisplatin Binding to Histidine in A Protein Struct. Dyn. 1, 034701 (2014) Regarding the Refinement of 4MWK, 4MWM, 4MWN and 4OXE and the Method We Have Adopted.
    Other atoms: Pt (3);
  17. 5ier (Na: 4) - Structure of A Computationally Designed 17-Ohp Binder
  18. 5if6 (Na: 3) - Structure of A Computationally Designed 17-Ohp Binder
  19. 5ih2 (Na: 4) - Structure, Thermodynamics, and the Role of Conformational Dynamics in the Interactions Between the N-Terminal SH3 Domain of Crkii and Proline-Rich Motifs in Cabl
  20. 5ihf (Na: 1) - Salmonella Typhimurium Virg-Like (Stv) Protein
  21. 5ihg (Na: 1) - The X-Ray Structure of the Adduct Formed in the Reaction Between Hen Egg White Lysozyme A Compound I, A Platin(II) Compound Containing A O, S Bidentate Ligand
    Other atoms: Pt (1); Cl (3);
  22. 5ihh (Na: 1) - Crystal Structure of Human Transthyretin in Complex with Luteolin-Meo at 1.35 A Resolution
  23. 5ihn (Na: 2) - Crystal Structure of the Alpha Spectrin SH3 Domain Mutant N47G
  24. 5ii0 (Na: 1) - Crystal Structure of the Human Calcitonin Receptor Ectodomain in Complex with A Truncated Salmon Calcitonin Analogue
    Other atoms: Br (2);
  25. 5ii3 (Na: 1) - The X-Ray Structure of the Adduct Formed in the Reaction Between Hen Egg White Lysozyme and Compound 3, A Platin(II) Compound Containing A O, S Bidentate Ligand
    Other atoms: Pt (1); Cl (5);
  26. 5iii (Na: 2) - Crystal Structure of the Pre-Catalytic Ternary Complex of Dna Polymerase Lambda with A Templating 8-Oxo-Dg and An Incoming Datp
    Other atoms: Mg (1);
  27. 5iij (Na: 2) - Crystal Structure of the Pre-Catalytic Ternary Complex of Dna Polymerase Lambda with A Templating 8-Oxo-Dg and An Incoming Dctp
    Other atoms: Mg (1);
  28. 5iik (Na: 2) - Crystal Structure of the Post-Catalytic Nick Complex of Dna Polymerase Lambda with A Templating 8-Oxo-Dg and Incorporated Dc
  29. 5iil (Na: 2) - Crystal Structure of the Post-Catalytic Nick Complex of Dna Polymerase Lambda with A Templating 8-Oxo-Dg and Incorporated Da
  30. 5iim (Na: 2) - Crystal Structure of the Pre-Catalytic Ternary Extension Complex of Dna Polymerase Lambda with An 8-Oxo-Dg:Da Base-Pair
  31. 5iin (Na: 1) - Crystal Structure of the Pre-Catalytic Ternary Extension Complex of Dna Polymerase Lambda with An 8-Oxo-Dg:Dc Base-Pair
    Other atoms: Mg (1);
  32. 5iio (Na: 6) - Crystal Structure of the Dna Polymerase Lambda Binary Complex
  33. 5iiz (Na: 5) - Xanthomonas Campestris Peroxiredoxin Q - Structure F0
  34. 5ijq (Na: 2) - Crystal Structure of Autotaxin (ENPP2) Re-Refined
    Other atoms: Zn (2); I (25); Ca (1);
  35. 5ijs (Na: 2) - Crystal Structure of Autotaxin with Orthovanadate Bound As A Trigonal Bipyramidal Intermediate Analog
    Other atoms: Zn (2); V (1); I (6); Ca (1);
  36. 5ilc (Na: 1) - The X-Ray Structure of the Adduct Formed in the Reaction Between Hen Egg White Lysozyme A Compound 2, A Platin(II) Compound Containing A O, S Bidentate Ligand
    Other atoms: Pt (1); Cl (5);
  37. 5ilf (Na: 1) - The X-Ray Structure of the Adduct Formed in the Reaction Between Hen Egg White Lysozyme and Compound 4, A Platin(II) Compound Containing A O, S Bidentate Ligand
    Other atoms: Pt (1); Cl (4);
  38. 5im9 (Na: 5) - Xanthomonas Campestris Peroxiredoxin Q - Structure F1
  39. 5ima (Na: 3) - Xanthomonas Campestris Peroxiredoxin Q - Structure F2
  40. 5imc (Na: 2) - Xanthomonas Campestris Peroxiredoxin Q - Structure F3
Page generated: Fri Dec 24 09:48:42 2021

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