Sodium in PDB 5ihn: Crystal Structure of the Alpha Spectrin SH3 Domain Mutant N47G

The structure of Crystal Structure of the Alpha Spectrin SH3 Domain Mutant N47G, PDB code: 5ihn was solved by A.Camara-Artigas, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.87 / 1.50
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	32.998, 41.863, 49.783, 90.00, 90.00, 90.00
R / Rfree (%)	16 / 17.8

The binding sites of Sodium atom in the Crystal Structure of the Alpha Spectrin SH3 Domain Mutant N47G (pdb code 5ihn). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of the Alpha Spectrin SH3 Domain Mutant N47G, PDB code: 5ihn:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of the Alpha Spectrin SH3 Domain Mutant N47G


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Alpha Spectrin SH3 Domain Mutant N47G within 5.0Å range: probe atom residue distance (Å) B Occ A:Na102 b:20.2 occ:1.00 OE2 A:GLU17 2.3 21.9 1.0 O A:GLU22 2.4 17.2 1.0 O A:SER19 2.5 16.5 1.0 O A:PRO20 2.7 21.0 1.0 HA A:PRO20 2.8 23.2 1.0 C A:PRO20 3.2 17.8 1.0 HH22 A:ARG49 3.2 29.8 1.0 HB2 A:GLU17 3.3 22.8 1.0 HG3 A:GLU17 3.3 22.3 1.0 CA A:PRO20 3.3 19.3 1.0 CD A:GLU17 3.3 20.8 1.0 C A:GLU22 3.4 15.8 1.0 C A:SER19 3.4 17.8 1.0 H A:GLU22 3.5 19.5 1.0 CG A:GLU17 3.6 18.6 1.0 O A:HOH201 3.7 20.7 1.0 O A:HOH221 3.8 32.7 1.0 N A:GLU22 3.8 16.3 1.0 N A:PRO20 3.8 19.2 1.0 NH2 A:ARG49 3.9 24.8 1.0 CB A:GLU17 3.9 19.0 1.0 HH21 A:ARG49 3.9 29.8 1.0 HB2 A:GLU22 4.0 20.5 1.0 HA A:VAL23 4.1 20.1 1.0 CA A:GLU22 4.1 15.6 1.0 N A:ARG21 4.1 18.9 1.0 HB3 A:GLU17 4.1 22.8 1.0 H A:SER19 4.3 21.2 1.0 OE1 A:GLU17 4.4 23.9 1.0 C A:ARG21 4.4 17.0 1.0 N A:VAL23 4.5 16.7 1.0 HG2 A:GLU17 4.6 22.3 1.0 CB A:GLU22 4.6 17.1 1.0 H A:ARG21 4.7 22.7 1.0 CB A:PRO20 4.7 19.9 1.0 CA A:SER19 4.7 18.8 1.0 CA A:VAL23 4.8 16.7 1.0 N A:SER19 4.8 17.6 1.0 CA A:ARG21 4.8 18.1 1.0 HB3 A:PRO20 4.8 23.9 1.0 HA A:GLU22 5.0 18.8 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of the Alpha Spectrin SH3 Domain Mutant N47G


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of the Alpha Spectrin SH3 Domain Mutant N47G within 5.0Å range: probe atom residue distance (Å) B Occ A:Na103 b:32.9 occ:1.00 O A:ALA55 2.3 18.0 1.0 O A:VAL58 2.4 22.0 1.0 O A:HOH236 2.4 37.4 1.0 O A:HOH238 2.5 51.5 1.0 C A:ALA55 3.4 16.8 1.0 HA A:ALA56 3.5 22.6 1.0 C A:VAL58 3.6 19.9 1.0 H A:VAL58 3.6 22.3 1.0 O A:HOH233 3.7 44.2 1.0 HG23 A:VAL58 3.7 28.7 1.0 HA A:LYS59 3.8 28.3 1.0 HB1 A:ALA55 3.9 21.6 1.0 HH2 A:TRP42 4.0 28.2 1.0 HG22 A:VAL58 4.1 28.7 1.0 CA A:ALA56 4.1 18.8 1.0 N A:ALA56 4.2 18.3 1.0 CH2 A:TRP42 4.2 23.5 1.0 N A:VAL58 4.3 18.6 1.0 C A:ALA56 4.3 18.8 1.0 CG2 A:VAL58 4.4 23.9 1.0 HA A:ALA55 4.4 20.3 1.0 HZ3 A:TRP42 4.4 27.5 1.0 CA A:ALA55 4.4 16.9 1.0 O A:ALA56 4.4 21.0 1.0 CZ3 A:TRP42 4.4 22.9 1.0 N A:LYS59 4.5 20.7 1.0 CA A:VAL58 4.5 18.7 1.0 CA A:LYS59 4.6 23.6 1.0 CB A:ALA55 4.6 18.0 1.0 H A:LYS60 4.8 27.8 1.0 CZ2 A:TRP42 4.8 22.1 1.0 N A:TYR57 4.9 17.5 1.0 HB3 A:ALA55 4.9 21.6 1.0

A.Camara-Artigas, A.Camara-Artigas. N/A N/A.