Atomistry » Sodium » PDB 5iaj-5imz » 5ibw
Atomistry »
  Sodium »
    PDB 5iaj-5imz »
      5ibw »

Sodium in PDB 5ibw: Complex of Mlcc Bound to the Tandem Iq Motif of Myoc

Protein crystallography data

The structure of Complex of Mlcc Bound to the Tandem Iq Motif of Myoc, PDB code: 5ibw was solved by D.N.Langelaan, S.P.Smith, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.20 / 1.90
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 28.680, 31.410, 56.410, 75.79, 84.00, 67.06
R / Rfree (%) 14 / 19

Sodium Binding Sites:

The binding sites of Sodium atom in the Complex of Mlcc Bound to the Tandem Iq Motif of Myoc (pdb code 5ibw). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Complex of Mlcc Bound to the Tandem Iq Motif of Myoc, PDB code: 5ibw:

Sodium binding site 1 out of 1 in 5ibw

Go back to Sodium Binding Sites List in 5ibw
Sodium binding site 1 out of 1 in the Complex of Mlcc Bound to the Tandem Iq Motif of Myoc


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Complex of Mlcc Bound to the Tandem Iq Motif of Myoc within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na101

b:25.7
occ:1.00
O A:HOH249 2.2 30.2 1.0
O A:HOH278 2.3 31.7 1.0
O A:LYS18 2.4 11.1 1.0
O A:ASP21 2.5 14.1 1.0
O A:HOH264 2.9 39.6 1.0
C A:LYS18 3.5 12.4 1.0
C A:ASP21 3.5 15.6 1.0
CA A:VAL19 4.2 13.0 1.0
N A:VAL19 4.3 12.1 1.0
CA A:GLY24 4.4 17.8 1.0
CA A:ASP21 4.4 13.4 1.0
N A:ARG22 4.4 19.9 1.0
O A:ARG22 4.4 25.6 1.0
CB A:ASP21 4.4 11.2 1.0
CA A:LYS18 4.4 9.9 1.0
CA A:ARG22 4.5 26.6 1.0
N A:GLY24 4.5 15.7 1.0
C A:ARG22 4.5 25.3 1.0
N A:ASP21 4.6 11.3 1.0
C A:VAL19 4.6 13.3 1.0
CB A:LYS18 4.8 11.8 1.0
CG A:ASP21 4.8 13.2 1.0
O A:VAL19 4.8 12.8 1.0

Reference:

D.N.Langelaan, J.Liburd, Y.Yang, E.Miller, S.Chitayat, S.W.Crawley, G.P.Cote, S.P.Smith. Structure of the Single-Lobe Myosin Light Chain C in Complex with the Light Chain-Binding Domains of Myosin-1C Provides Insights Into Divergent Iq Motif Recognition. J.Biol.Chem. V. 291 19607 2016.
ISSN: ESSN 1083-351X
PubMed: 27466369
DOI: 10.1074/JBC.M116.746313
Page generated: Mon Oct 7 21:34:08 2024

Last articles

Zn in 9FD2
Zn in 9GUW
Zn in 9GUX
Zn in 9F7C
Zn in 9GUR
Zn in 9F7A
Zn in 9DDE
Zn in 9DBY
Zn in 9EBZ
Zn in 9DGG
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy