Atomistry » Sodium » PDB 5iaj-5imz » 5ihg
Atomistry »
  Sodium »
    PDB 5iaj-5imz »
      5ihg »

Sodium in PDB 5ihg: The X-Ray Structure of the Adduct Formed in the Reaction Between Hen Egg White Lysozyme A Compound I, A Platin(II) Compound Containing A O, S Bidentate Ligand

Enzymatic activity of The X-Ray Structure of the Adduct Formed in the Reaction Between Hen Egg White Lysozyme A Compound I, A Platin(II) Compound Containing A O, S Bidentate Ligand

All present enzymatic activity of The X-Ray Structure of the Adduct Formed in the Reaction Between Hen Egg White Lysozyme A Compound I, A Platin(II) Compound Containing A O, S Bidentate Ligand:
3.2.1.17;

Protein crystallography data

The structure of The X-Ray Structure of the Adduct Formed in the Reaction Between Hen Egg White Lysozyme A Compound I, A Platin(II) Compound Containing A O, S Bidentate Ligand, PDB code: 5ihg was solved by G.Ferraro, A.Merlino, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 54.85 / 1.75
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 77.575, 77.575, 37.253, 90.00, 90.00, 90.00
R / Rfree (%) 16.2 / 20.3

Other elements in 5ihg:

The structure of The X-Ray Structure of the Adduct Formed in the Reaction Between Hen Egg White Lysozyme A Compound I, A Platin(II) Compound Containing A O, S Bidentate Ligand also contains other interesting chemical elements:

Platinum (Pt) 1 atom
Chlorine (Cl) 3 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the The X-Ray Structure of the Adduct Formed in the Reaction Between Hen Egg White Lysozyme A Compound I, A Platin(II) Compound Containing A O, S Bidentate Ligand (pdb code 5ihg). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the The X-Ray Structure of the Adduct Formed in the Reaction Between Hen Egg White Lysozyme A Compound I, A Platin(II) Compound Containing A O, S Bidentate Ligand, PDB code: 5ihg:

Sodium binding site 1 out of 1 in 5ihg

Go back to Sodium Binding Sites List in 5ihg
Sodium binding site 1 out of 1 in the The X-Ray Structure of the Adduct Formed in the Reaction Between Hen Egg White Lysozyme A Compound I, A Platin(II) Compound Containing A O, S Bidentate Ligand


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The X-Ray Structure of the Adduct Formed in the Reaction Between Hen Egg White Lysozyme A Compound I, A Platin(II) Compound Containing A O, S Bidentate Ligand within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na206

b:26.4
occ:1.00
 O A:SER60 2.3 23.5 1.0
O A:HOH371 2.4 23.4 1.0
O A:HOH358 2.4 24.1 1.0
OG A:SER72 2.4 30.3 1.0
O A:CYS64 2.5 20.6 1.0
O A:ARG73 2.5 30.0 1.0
CB A:SER72 3.2 29.9 1.0
C A:SER60 3.5 22.5 1.0
C A:ARG73 3.5 28.8 1.0
C A:CYS64 3.6 21.2 1.0
CA A:ASN65 3.9 22.1 1.0
N A:ARG73 4.0 28.7 1.0
CA A:SER60 4.0 22.4 1.0
C A:SER72 4.1 31.0 1.0
N A:ASN65 4.2 22.8 1.0
CB A:SER60 4.2 21.8 1.0
CA A:SER72 4.3 32.8 1.0
N A:ASN74 4.3 25.7 1.0
CA A:ARG73 4.4 29.9 1.0
CA A:ASN74 4.5 27.0 1.0
N A:ASP66 4.5 22.8 1.0
O A:HOH367 4.5 38.3 1.0
N A:CYS64 4.6 23.5 1.0
CL A:CL204 4.6 29.2 1.0
OD1 A:ASN65 4.6 29.1 1.0
N A:ARG61 4.6 24.0 1.0
O A:SER72 4.6 30.6 1.0
CB A:THR69 4.6 25.3 1.0
C A:ARG61 4.6 26.8 1.0
O A:ARG61 4.7 29.2 1.0
CA A:CYS64 4.7 23.1 1.0
CB A:ASN74 4.7 26.1 1.0
CB A:ASN65 4.7 24.7 1.0
C A:ASN65 4.7 21.0 1.0
N A:TRP62 4.9 25.6 1.0
CA A:ARG61 5.0 28.2 1.0

Reference:

J.Hildebrandt, N.Hafner, H.Gorls, D.Kritsch, G.Ferraro, M.Durst, I.B.Runnebaum, A.Merlino, W.Weigand. Platinum(II) O,S Complexes As Potential Metallodrugs Against Cisplatin Resistance. Dalton Trans V. 45 18876 2016.
ISSN: ESSN 1477-9234
PubMed: 27897281
DOI: 10.1039/C6DT01388K
Page generated: Mon Oct 7 21:35:44 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy