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Sodium in PDB, part 140 (files: 5561-5600), PDB 5cvy-5dba

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 5561-5600 (PDB 5cvy-5dba).
  1. 5cvy (Na: 15) - The Structure of Bacillus Pumilus GH48 in Complex with Cellobiose and Cellohexaose
    Other atoms: Ca (1);
  2. 5cw2 (Na: 1) - Crystal Structure of Epoxide Hydrolase A From Mycobacterium Thermoresistibile
  3. 5cwl (Na: 1) - Crystal Structure of De Novo Designed Helical Repeat Protein DHR54
  4. 5cwy (Na: 1) - Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryze Pv Oryzae, in Complex with Fragment 83
    Other atoms: Cd (3);
  5. 5cx7 (Na: 18) - Crystal Structure of Pduoc:Heme Complex
    Other atoms: Mg (2); Fe (8); Cl (4);
  6. 5cxb (Na: 1) - Structure of YTM1 Bound to the C-Terminal Domain of ERB1 in P21 21 2 Space Group
    Other atoms: Cl (1);
  7. 5cxj (Na: 1) - Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryzae Pv Oryzae, in Complex with Fragment 124
    Other atoms: Cd (4);
  8. 5cxp (Na: 7) - X-Ray Crystallographic Protein Structure of the Glycoside Hydrolase Family 30 Subfamily 8 Xylanase, XYN30A, From Clostridium Acetobutylicum
    Other atoms: Cl (16);
  9. 5cy7 (Na: 1) - Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryze Pv Oryze, in Complex with Fragment 275
    Other atoms: F (2); Cd (3);
  10. 5cy8 (Na: 1) - Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryzae Pv Oryze, in Complex with Fragment 244
    Other atoms: Cd (3);
  11. 5czg (Na: 2) - Crystal Structure Analysis of Hypothetical Bromodomain TB427.10.7420 From Trypanosoma Brucei in Complex with Bromosporine
  12. 5czz (Na: 5) - Crystal Structure of Staphylococcus Aureus CAS9 in Complex with Sgrna and Target Dna (Ttgaat Pam)
  13. 5d18 (Na: 1) - Crystal Structure of Mycobacterium Tuberculosis RV0302, Form I
  14. 5d26 (Na: 1) - First Bromodomain of BRD4 Bound to Inhibitor XD28
  15. 5d3d (Na: 1) - Crystal Structure of Staphylococcal Superantigen-Like Protein 3
    Other atoms: Cl (4);
  16. 5d3t (Na: 1) - First Bromodomain of BRD4 Bound to Inhibitor XD47
  17. 5d46 (Na: 1) - Structural Basis For A New Templated Activity By Terminal Deoxynucleotidyl Transferase: Implications For V(D)J Recombination
    Other atoms: Mg (1);
  18. 5d49 (Na: 1) - Structural Basis For A New Templated Activity By Terminal Deoxynucleotidyl Transferase: Implications For V(D)J Recombination
    Other atoms: Mg (1);
  19. 5d4b (Na: 2) - Structural Basis For A New Templated Activity By Terminal Deoxynucleotidyl Transferase: Implications For V(D)J Recombination
    Other atoms: Mg (2);
  20. 5d4f (Na: 3) - Crystal Structure of C-As Lyase with Fe(III)
    Other atoms: Fe (1); Cl (1);
  21. 5d5c (Na: 1) - In Meso in Situ Serial X-Ray Crystallography Structure of Lysozyme at 100 K
    Other atoms: Br (7);
  22. 5d5d (Na: 2) - In Meso in Situ Serial X-Ray Crystallography Structure of Alge at 100 K
    Other atoms: Ca (1);
  23. 5d5f (Na: 1) - In Meso in Situ Serial X-Ray Crystallography Structure of Lysozyme By Bromine-Sad at 100 K
    Other atoms: Br (7);
  24. 5d5s (Na: 1) - Crystal Structure of Methionine Gamma-Lyase From Citrobacter Freundii, S339A Mutant
  25. 5d61 (Na: 1) - Moa-Z-Vad-Fmk Complex, Direct Orientation
    Other atoms: Cl (1); Ca (2);
  26. 5d63 (Na: 1) - Moa-Z-Vad-Fmk Inhibitor Complex, Direct/Inverted Dual Orientation
    Other atoms: Cl (3); Ca (2);
  27. 5d6a (Na: 1) - 2.7 Angstrom Crystal Structure of Abc Transporter Atpase From Vibrio Vulnificus in Complex with Adenylyl-Imidodiphosphate (Amp-Pnp)
  28. 5d74 (Na: 7) - The Crystal Structure of LY7917
    Other atoms: Cl (6);
  29. 5d77 (Na: 1) - Structure of MIP6 RRM3 Domain
  30. 5d7z (Na: 1) - Crystal Structure of Glyoxalase I From Zea Mays
    Other atoms: Ni (1);
  31. 5d8g (Na: 1) - A Structural View on the Dissociation of E. Coli Tryptophanase
    Other atoms: Mg (3); Ca (1); Cl (1);
  32. 5d8h (Na: 4) - Crystal Structure of the Base of the Ribosomal P Stalk From Methanococcus Jannaschii with Antibiotic Thiostrepton
    Other atoms: Mg (11);
  33. 5d8x (Na: 24) - 1.50A Resolution Structure of Bfrb (L68A E81A) From Pseudomonas Aeruginosa
    Other atoms: K (6); Fe (12);
  34. 5d9t (Na: 1) - Crystal Structure of Dehydroascorbate Reductase (Osdhar) From Oryza Sativa L. Japonica
  35. 5d9u (Na: 8) - Structure of Thiamine-Monophosphate Kinase From Acinetobacter Baumannii in Complex with Adenosine Diphosphate (Adp) and Thiamine Diphosphate (Tpp), Orthorhombic Crystal Form
    Other atoms: Mg (4);
  36. 5db6 (Na: 2) - Structure of Human Dna Polymerase Beta Host-Guest Complex with the N7MG Base Paired with A Dc
    Other atoms: F (1);
  37. 5db7 (Na: 2) - Structure of Human Dna Polymerase Beta Host-Guest Complex with the N7MG Base Paired with A Dt
    Other atoms: F (1);
  38. 5db8 (Na: 2) - Structure of Human Dna Polymerase Beta Host-Guest Complex with the N7MG Base Paired with A Da
    Other atoms: F (1);
  39. 5db9 (Na: 2) - Structure of Human Dna Polymerase Beta Host-Guest Complex with the N7MG Base Paired with A Dg
    Other atoms: F (1);
  40. 5dba (Na: 2) - Structure of Human Dna Polymerase Beta Host-Guest Complex with the Dg Base Paired with A Dt
Page generated: Wed Nov 4 05:33:33 2020

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