Sodium in PDB 5d77: Structure of MIP6 RRM3 Domain

The structure of Structure of MIP6 RRM3 Domain, PDB code: 5d77 was solved by N.Mohamad, J.Bravo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.77 / 1.30
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	36.310, 36.310, 91.816, 90.00, 90.00, 90.00
R / Rfree (%)	15.1 / 18.2

The binding sites of Sodium atom in the Structure of MIP6 RRM3 Domain (pdb code 5d77). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of MIP6 RRM3 Domain, PDB code: 5d77:

Sodium binding site 1 out of 1 in the Structure of MIP6 RRM3 Domain


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of MIP6 RRM3 Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Na404 b:37.5 occ:1.00 HG A:SER345 2.2 39.1 1.0 OG A:SER345 2.7 32.5 1.0 H A:GLU346 3.2 21.5 1.0 O A:GLU346 3.4 29.5 1.0 HZ3 A:LYS347 3.6 50.8 1.0 N A:GLU346 3.7 17.9 1.0 HA A:SER345 4.0 24.8 1.0 CB A:SER345 4.0 27.2 1.0 HB3 A:GLU346 4.0 29.2 1.0 HE2 A:LYS347 4.1 48.7 1.0 HZ1 A:LYS347 4.1 50.8 1.0 C A:GLU346 4.2 24.9 1.0 HG3 A:LYS347 4.2 37.6 1.0 NZ A:LYS347 4.2 42.3 1.0 HG2 A:LYS347 4.3 37.6 1.0 CA A:SER345 4.3 20.7 1.0 C A:SER345 4.4 19.2 1.0 CA A:GLU346 4.4 22.1 1.0 HB3 A:SER345 4.4 32.7 1.0 HB2 A:SER345 4.6 32.7 1.0 CB A:GLU346 4.7 24.4 1.0 CE A:LYS347 4.7 40.5 1.0 CG A:LYS347 4.7 31.3 1.0 HB2 A:GLU346 5.0 29.2 1.0

N.Mohamad, J.Bravo. Structure of MIP6 RRM3 Domain at 1.3 To Be Published.