Sodium in PDB 5d9t: Crystal Structure of Dehydroascorbate Reductase (Osdhar) From Oryza Sativa L. Japonica

The structure of Crystal Structure of Dehydroascorbate Reductase (Osdhar) From Oryza Sativa L. Japonica, PDB code: 5d9t was solved by H.Do, J.H.Lee, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	24.73 / 1.90
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	47.030, 48.380, 51.830, 90.00, 107.41, 90.00
R / Rfree (%)	15.4 / 19.6

The binding sites of Sodium atom in the Crystal Structure of Dehydroascorbate Reductase (Osdhar) From Oryza Sativa L. Japonica (pdb code 5d9t). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Dehydroascorbate Reductase (Osdhar) From Oryza Sativa L. Japonica, PDB code: 5d9t:

Sodium binding site 1 out of 1 in the Crystal Structure of Dehydroascorbate Reductase (Osdhar) From Oryza Sativa L. Japonica


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Dehydroascorbate Reductase (Osdhar) From Oryza Sativa L. Japonica within 5.0Å range: probe atom residue distance (Å) B Occ A:Na301 b:14.6 occ:1.00 N A:LYS47 3.3 13.7 1.0 NZ A:LYS47 3.5 29.7 1.0 N A:ASN46 3.8 13.3 1.0 C A:GLN45 3.8 13.6 1.0 CG A:LYS47 3.8 16.2 1.0 CA A:ASN46 3.9 14.1 1.0 O A:GLN45 3.9 16.4 1.0 O A:VAL44 3.9 15.7 1.0 C A:ASN46 4.0 18.6 1.0 CB A:LYS47 4.2 15.4 1.0 CA A:LYS47 4.3 15.5 1.0 CA A:GLN45 4.4 16.1 1.0 CD A:LYS47 4.4 17.1 1.0 CE A:LYS47 4.5 29.3 1.0 C A:VAL44 4.6 19.8 1.0 N A:GLN45 4.9 17.7 1.0

H.Do, I.S.Kim, B.W.Jeon, C.W.Lee, A.K.Park, A.R.Wi, S.C.Shin, H.Park, Y.S.Kim, H.S.Yoon, H.W.Kim, J.H.Lee. Structural Understanding of the Recycling of Oxidized Ascorbate By Dehydroascorbate Reductase (Osdhar) From Oryza Sativa L. Japonica Sci Rep V. 6 19498 2016.
ISSN: ESSN 2045-2322
PubMed: 26775680
DOI: 10.1038/SREP19498