Sodium in PDB 5d6a: 2.7 Angstrom Crystal Structure of Abc Transporter Atpase From Vibrio Vulnificus in Complex with Adenylyl-Imidodiphosphate (Amp-Pnp)

The structure of 2.7 Angstrom Crystal Structure of Abc Transporter Atpase From Vibrio Vulnificus in Complex with Adenylyl-Imidodiphosphate (Amp-Pnp), PDB code: 5d6a was solved by G.Minasov, Z.Wawrzak, L.Shuvalova, I.Dubrovska, K.Flores, S.Grimshaw, K.Kwon, W.F.Anderson, Center For Structural Genomics Of Infectiousdiseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.55 / 2.70
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	104.957, 104.957, 85.354, 90.00, 90.00, 120.00
R / Rfree (%)	19.4 / 25.6

The binding sites of Sodium atom in the 2.7 Angstrom Crystal Structure of Abc Transporter Atpase From Vibrio Vulnificus in Complex with Adenylyl-Imidodiphosphate (Amp-Pnp) (pdb code 5d6a). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the 2.7 Angstrom Crystal Structure of Abc Transporter Atpase From Vibrio Vulnificus in Complex with Adenylyl-Imidodiphosphate (Amp-Pnp), PDB code: 5d6a:

Sodium binding site 1 out of 1 in the 2.7 Angstrom Crystal Structure of Abc Transporter Atpase From Vibrio Vulnificus in Complex with Adenylyl-Imidodiphosphate (Amp-Pnp)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of 2.7 Angstrom Crystal Structure of Abc Transporter Atpase From Vibrio Vulnificus in Complex with Adenylyl-Imidodiphosphate (Amp-Pnp) within 5.0Å range: probe atom residue distance (Å) B Occ A:Na601 b:52.2 occ:1.00 O3G A:ANP602 2.4 69.2 1.0 O2B A:ANP602 2.5 54.9 1.0 OD2 A:ASP339 3.4 76.2 1.0 PG A:ANP602 3.4 71.5 1.0 PB A:ANP602 3.6 53.3 1.0 N3B A:ANP602 3.7 63.3 1.0 O2G A:ANP602 3.8 68.1 1.0 CA A:GLY243 3.9 63.5 1.0 NZ A:LYS247 4.0 48.3 1.0 N A:PHE244 4.0 59.6 1.0 O1B A:ANP602 4.4 55.4 1.0 C A:GLY243 4.5 62.7 1.0 CG A:ASP339 4.6 72.1 1.0 O1G A:ANP602 4.8 74.1 1.0 CE A:LYS247 4.8 47.3 1.0 O3A A:ANP602 4.9 50.9 1.0 N A:GLY243 5.0 65.7 1.0

G.Minasov, Z.Wawrzak, L.Shuvalova, I.Dubrovska, K.Flores, S.Grimshaw, K.Kwon, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid). 2.7 Angstrom Crystal Structure of Abc Transporter Atpase From Vibrio Vulnificus in Complex with Adenylyl-Imidodiphosphate (Amp-Pnp) To Be Published.