Sodium in PDB 5d18: Crystal Structure of Mycobacterium Tuberculosis RV0302, Form I

The structure of Crystal Structure of Mycobacterium Tuberculosis RV0302, Form I, PDB code: 5d18 was solved by T.-H.Chou, J.Delmar, C.-C.Su, E.Yu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.18 / 2.04
Space group	P 61 2 2
Cell size a, b, c (Å), α, β, γ (°)	116.628, 116.628, 94.178, 90.00, 90.00, 120.00
R / Rfree (%)	19.2 / 21.5

The binding sites of Sodium atom in the Crystal Structure of Mycobacterium Tuberculosis RV0302, Form I (pdb code 5d18). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Mycobacterium Tuberculosis RV0302, Form I, PDB code: 5d18:

Sodium binding site 1 out of 1 in the Crystal Structure of Mycobacterium Tuberculosis RV0302, Form I


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Mycobacterium Tuberculosis RV0302, Form I within 5.0Å range: probe atom residue distance (Å) B Occ A:Na303 b:63.1 occ:1.00 O A:HOH472 2.7 57.2 1.0 HA A:PHE108 2.8 41.0 1.0 HA A:MET66 2.9 47.9 1.0 O A:MET65 2.9 37.3 1.0 HB3 A:PHE108 2.9 49.0 1.0 HA3 A:GLY69 2.9 46.4 1.0 HB2 A:PHE108 3.0 49.0 1.0 HG2 A:MET65 3.0 55.6 0.6 CB A:PHE108 3.2 40.8 1.0 CA A:PHE108 3.4 34.1 1.0 HD23 A:LEU111 3.5 51.7 1.0 HD22 A:LEU111 3.5 51.7 1.0 H A:GLY69 3.6 45.7 1.0 C A:MET65 3.6 38.9 1.0 O A:HOH421 3.6 43.6 1.0 CA A:MET66 3.7 39.9 1.0 N A:PHE108 3.7 36.4 1.0 CA A:GLY69 3.8 38.6 1.0 O A:HOH476 3.9 40.2 1.0 H A:PHE108 3.9 43.7 1.0 CD2 A:LEU111 3.9 43.0 1.0 CG A:MET65 4.0 46.3 0.6 HB3 A:MET65 4.0 49.9 0.4 N A:MET66 4.0 40.1 1.0 N A:GLY69 4.1 38.1 1.0 O A:MET66 4.1 35.6 1.0 HA2 A:GLY69 4.1 46.4 1.0 C A:MET66 4.3 37.1 1.0 HB3 A:ASP107 4.3 48.8 1.0 HG3 A:MET65 4.3 55.6 0.6 HD21 A:LEU111 4.3 51.7 1.0 C A:ASP107 4.4 38.3 1.0 OE2 A:GLU24 4.4 70.1 1.0 HB2 A:LEU111 4.6 46.4 1.0 HG2 A:MET66 4.7 44.9 1.0 CG A:PHE108 4.7 34.0 1.0 CA A:MET65 4.7 40.5 0.4 SD A:MET65 4.7 45.0 0.6 O A:ASP107 4.7 35.4 1.0 H A:MET66 4.7 48.1 1.0 CA A:MET65 4.8 40.4 0.6 C A:PHE108 4.8 31.0 1.0 CB A:MET65 4.8 41.6 0.4 CB A:MET65 4.9 40.8 0.6 CB A:MET66 4.9 36.1 1.0 HB2 A:MET66 4.9 43.3 1.0 HA A:MET65 4.9 48.6 0.4 C A:GLY69 4.9 37.9 1.0 HA A:MET65 5.0 48.5 0.6 H A:ALA70 5.0 43.4 1.0

T.H.Chou, J.A.Delmar, C.C.Wright, N.Kumar, A.Radhakrishnan, J.K.Doh, M.H.Licon, J.Reddy Bolla, H.T.Lei, K.R.Rajashankar, C.C.Su, G.E.Purdy, E.W.Yu. Crystal Structure of the Mycobacterium Tuberculosis Transcriptional Regulator RV0302. Protein Sci. 2015.
ISSN: ESSN 1469-896X
PubMed: 26362239
DOI: 10.1002/PRO.2802