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Sodium in PDB, part 76 (files: 3001-3040), PDB 3pkk-3pzs

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 3001-3040 (PDB 3pkk-3pzs).
  1. 3pkk (Na: 1) - Urate Oxidase Under 0.5 Mpa / 5 Bars Pressure of Xenon
    Other atoms: Xe (1);
  2. 3pkl (Na: 1) - Urate Oxidase Under 0.8 Mpa / 8 Bars Pressure of Xenon
    Other atoms: Xe (1);
  3. 3pks (Na: 1) - Urate Oxidase Under 1.5 Mpa / 15 Bars Pressure of Nitrous Oxide
  4. 3pkt (Na: 1) - Urate Oxidase Under 2 Mpa / 20 Bars Pressure of Nitrous Oxide
  5. 3pku (Na: 1) - Urate Oxidase Under 1 Mpa / 10 Bars Pressure of Nitrous Oxide
    Other atoms: Cl (1);
  6. 3ple (Na: 1) - Urate Oxidase Under 0.5 Mpa / 5 Bars Pressure of Equimolar Mixture Xenon : Nitrous Oxide
    Other atoms: Xe (1);
  7. 3plg (Na: 1) - Urate Oxidase Under 1.0 Mpa / 10 Bars Pressure of Equimolar Mixture Xenon : Nitrous Oxide
    Other atoms: Xe (1);
  8. 3plh (Na: 1) - Urate Oxidase Under 1.5 Mpa / 15 Bars Pressure of Equimolar Mixture Xenon : Nitrous Oxide
    Other atoms: Xe (2);
  9. 3pli (Na: 1) - Urate Oxidase Under 1.8 Mpa / 18 Bars Pressure of Equimolar Mixture Xenon : Nitrous Oxide
    Other atoms: Xe (2);
  10. 3plj (Na: 1) - Urate Oxidase Under 3.0 Mpa / 30 Bars Pressure of Equimolar Mixture Xenon : Nitrous Oxide
    Other atoms: Xe (2);
  11. 3plm (Na: 1) - Urate Oxidase Under 2.0 Mpa / 20 Bars Pressure of Equimolar Mixture Xenon : Nitrous Oxide
    Other atoms: Xe (2);
  12. 3ply (Na: 2) - Structure of Oxidized P96G Mutant of Amicyanin
    Other atoms: K (1); Cu (4);
  13. 3pm8 (Na: 3) - Cad Domain of PFF0520W, Calcium Dependent Protein Kinase
    Other atoms: Cl (2); Ca (6);
  14. 3pma (Na: 2) - 2.2 Angstrom Crystal Structure of the Complex Between Bovine Thrombin and Sucrose Octasulfate
  15. 3pmb (Na: 2) - 2.9 Angstrom Crystal Structure of Bovine Thrombin in Tetragonal Spacegroup
  16. 3pml (Na: 3) - Crystal Structure of A Polymerase Lambda Variant with A Dgtp Analog Opposite A Templating T
    Other atoms: Mg (4);
  17. 3pmn (Na: 2) - Ternary Crystal Structure of Polymerase Lambda Variant with A Gt Mispair at the Primer Terminus with MN2+ in the Active Site
    Other atoms: Mg (1); Mn (3); Cl (2);
  18. 3pnc (Na: 3) - Ternary Crystal Structure of A Polymerase Lambda Variant with A Gt Mispair at the Primer Terminus and Sodium at Catalytic Metal Site
    Other atoms: Mg (1);
  19. 3pnx (Na: 10) - Crystal Structure of A Putative Sulfurtransferase Dsre (SWOL_2425) From Syntrophomonas Wolfei Str. Goettingen at 1.92 A Resolution
    Other atoms: Cl (2);
  20. 3po1 (Na: 1) - Thrombin in Complex with Benzothiazole Guanidine
  21. 3po4 (Na: 1) - Structure of A Mutant of the Large Fragment of Dna Polymerase I From Thermus Aquaticus in Complex with A Blunt-Ended Dna and Ddatp
    Other atoms: Mg (3);
  22. 3ppw (Na: 1) - Crystal Structure of the D1596A Mutant of An Engineered Vwf A2 Domain (N1493C and C1670S)
  23. 3ppx (Na: 1) - Crystal Structure of the N1602A Mutant of An Engineered Vwf A2 Domain (N1493C and C1670S)
  24. 3ppy (Na: 1) - Crystal Structure of the D1596A/N1602A Double Mutant of An Engineered Vwf A2 Domain (N1493C and C1670S)
  25. 3pqh (Na: 7) - Crystal Structure of the C-Terminal Fragment of the Bacteriophage PHI92 Membrane-Piercing Protein GP138
    Other atoms: Fe (2);
  26. 3pru (Na: 1) - Crystal Structure of Phycobilisome 32.1 kDa Linker Polypeptide, Phycocyanin-Associated, Rod 1 (Fragment 14-158) From Synechocystis Sp. Pcc 6803, Northeast Structural Genomics Consortium Target SGR182A
    Other atoms: Cl (1);
  27. 3pui (Na: 1) - Cocaine Esterase with Mutations G4C, S10C
    Other atoms: Cl (5);
  28. 3pvz (Na: 3) - Udp-N-Acetylglucosamine 4,6-Dehydratase From Vibrio Fischeri
  29. 3pwk (Na: 2) - Crystal Structure of Aspartate Beta-Semialdehide Dehydrogenase From Streptococcus Pneumoniae with 2',5'-Adenosine Diphosphate and D-2- Aminoadipate
  30. 3pwm (Na: 1) - Hiv-1 Protease Mutant L76V with Darunavir
    Other atoms: Cl (2);
  31. 3pws (Na: 1) - Crystal Structure of Aspartate Beta-Semialdehide Dehydrogenase From Streptococcus Pneumoniae with 2',5'-Adenosine Diphosphate and D-2- Aminoadipate
  32. 3pxs (Na: 4) - Crystal Structure of Diferrous Maug in Complex with Pre-Methylamine Dehydrogenase:
    Other atoms: Fe (4); Ca (2);
  33. 3pxt (Na: 3) - Crystal Structure of Ferrous Co Adduct of Maug in Complex with Pre- Methylamine Dehydrogenase
    Other atoms: Fe (4); Ca (2);
  34. 3pxw (Na: 2) - Crystal Structure of Ferrous No Adduct of Maug in Complex with Pre- Methylamine Dehydrogenase
    Other atoms: Fe (4); Ca (2);
  35. 3pym (Na: 1) - Structure of Gapdh 3 From S.Cerevisiae at 2.0 A Resolution
  36. 3pyx (Na: 1) - Crystals Structure of Aspartate Beta-Semialdehyde Dehydrogenase Complex with Nadp and 2-Aminoterephthalate
  37. 3pzb (Na: 1) - Crystals Structure of Aspartate Beta-Semialdehyde Dehydrogenase Complex with Nadp and D-2,3-Diaminopropionate
  38. 3pzj (Na: 2) - Crystal Structure of A Probable Acetyltransferases (Gnat Family) From Chromobacterium Violaceum Atcc 12472
  39. 3pzr (Na: 2) - Crystals Structure of Aspartate Beta-Semialdehyde Dehydrogenase From Vibrio Cholerae with Nadp and Product of S-Carbamoyl-L-Cysteine
  40. 3pzs (Na: 2) - Crystal Structure of A Pyridoxamine Kinase From Yersinia Pestis CO92
Page generated: Sat Sep 25 14:43:50 2021

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