Sodium in PDB 3pym: Structure of Gapdh 3 From S.Cerevisiae at 2.0 A Resolution

All present enzymatic activity of Structure of Gapdh 3 From S.Cerevisiae at 2.0 A Resolution:
1.2.1.12;

The structure of Structure of Gapdh 3 From S.Cerevisiae at 2.0 A Resolution, PDB code: 3pym was solved by I.Garcia-Saez, F.Kozielski, D.Job, C.Boscheron, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.62 / 2.00
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	121.834, 131.052, 96.685, 90.00, 90.00, 90.00
R / Rfree (%)	14.7 / 18.9

The binding sites of Sodium atom in the Structure of Gapdh 3 From S.Cerevisiae at 2.0 A Resolution (pdb code 3pym). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of Gapdh 3 From S.Cerevisiae at 2.0 A Resolution, PDB code: 3pym:

Sodium binding site 1 out of 1 in the Structure of Gapdh 3 From S.Cerevisiae at 2.0 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Gapdh 3 From S.Cerevisiae at 2.0 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Na504 b:26.6 occ:1.00 O B:ARG23 2.5 19.5 1.0 O B:VAL26 2.6 23.0 1.0 O B:ALA20 2.6 15.8 1.0 O B:HOH519 2.7 33.2 1.0 C B:ARG23 3.4 19.0 1.0 C B:LEU21 3.5 26.3 1.0 O B:LEU21 3.5 27.6 1.0 N B:ARG23 3.6 18.6 1.0 C B:VAL26 3.6 21.1 1.0 CA B:LEU21 3.7 18.0 1.0 C B:ALA20 3.7 21.4 1.0 CA B:ARG23 4.0 17.6 1.0 N B:LEU21 4.1 15.4 1.0 N B:SER22 4.2 15.7 1.0 O B:HOH340 4.2 32.0 1.0 N B:VAL26 4.2 21.8 1.0 CA B:VAL26 4.3 17.6 1.0 CB B:VAL26 4.3 21.2 1.0 N B:PRO24 4.3 23.3 1.0 C B:SER22 4.4 18.2 1.0 CB B:ARG23 4.5 27.3 1.0 CA B:PRO24 4.5 27.3 1.0 C B:PRO24 4.7 22.2 1.0 N B:GLU27 4.7 15.9 1.0 CA B:SER22 4.7 16.9 1.0 O B:HOH552 4.7 33.3 1.0 CA B:GLU27 4.8 18.1 1.0 O B:PRO24 4.9 20.9 1.0 CG1 B:VAL26 4.9 18.7 1.0 CA B:ALA20 4.9 14.6 1.0 CB B:LEU21 5.0 13.7 1.0

I.Garcia-Saez, F.Kozielski, D.Job, C.Boscheron. N/A N/A.