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Sodium in PDB 3pzj: Crystal Structure of A Probable Acetyltransferases (Gnat Family) From Chromobacterium Violaceum Atcc 12472

Protein crystallography data

The structure of Crystal Structure of A Probable Acetyltransferases (Gnat Family) From Chromobacterium Violaceum Atcc 12472, PDB code: 3pzj was solved by B.Nocek, A.Stein, L.Bigelow, B.Feldmann, A.Joachimiak, Midwest Center Forstructural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.00 / 1.85
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 64.665, 67.434, 85.271, 90.00, 90.00, 90.00
R / Rfree (%) 19.5 / 24.4

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of A Probable Acetyltransferases (Gnat Family) From Chromobacterium Violaceum Atcc 12472 (pdb code 3pzj). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of A Probable Acetyltransferases (Gnat Family) From Chromobacterium Violaceum Atcc 12472, PDB code: 3pzj:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in 3pzj

Go back to Sodium Binding Sites List in 3pzj
Sodium binding site 1 out of 2 in the Crystal Structure of A Probable Acetyltransferases (Gnat Family) From Chromobacterium Violaceum Atcc 12472


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Probable Acetyltransferases (Gnat Family) From Chromobacterium Violaceum Atcc 12472 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na301

b:26.4
occ:1.00
O A:VAL83 2.2 26.2 1.0
O A:THR88 2.2 28.0 1.0
O A:HOH278 2.3 42.8 1.0
O A:GLN85 2.3 27.1 1.0
O A:HOH257 2.4 33.1 1.0
C A:VAL83 3.3 26.8 1.0
C A:GLN85 3.4 28.5 1.0
C A:THR88 3.5 26.6 1.0
CA A:VAL83 4.0 28.2 1.0
C A:ALA84 4.1 27.3 1.0
N A:GLN85 4.1 28.7 1.0
N A:THR88 4.1 24.3 1.0
CA A:SER86 4.2 30.6 1.0
CG1 A:VAL83 4.2 33.7 1.0
CA A:THR88 4.3 25.1 1.0
N A:SER86 4.3 29.0 1.0
C A:SER86 4.3 30.7 1.0
O A:ALA84 4.3 28.9 1.0
N A:ALA84 4.3 26.7 1.0
CA A:GLN85 4.3 29.8 1.0
O A:SER86 4.5 32.9 1.0
CA A:ALA84 4.5 26.9 1.0
N A:ALA89 4.5 23.6 1.0
CB A:THR88 4.6 25.5 1.0
CA A:ALA89 4.7 24.9 1.0
CB A:VAL83 4.8 28.9 1.0
O A:THR82 4.8 27.6 1.0
N A:ASP87 4.8 27.5 1.0
O A:HOH239 4.9 30.0 1.0

Sodium binding site 2 out of 2 in 3pzj

Go back to Sodium Binding Sites List in 3pzj
Sodium binding site 2 out of 2 in the Crystal Structure of A Probable Acetyltransferases (Gnat Family) From Chromobacterium Violaceum Atcc 12472


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of A Probable Acetyltransferases (Gnat Family) From Chromobacterium Violaceum Atcc 12472 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na301

b:29.2
occ:1.00
O B:THR88 2.2 28.1 1.0
O B:GLN85 2.3 27.2 1.0
O B:VAL83 2.4 28.2 1.0
O B:HOH234 2.6 29.7 1.0
O B:HOH235 2.6 48.7 1.0
C B:THR88 3.4 27.0 1.0
C B:GLN85 3.5 31.1 1.0
C B:VAL83 3.5 27.4 1.0
N B:THR88 4.1 27.5 1.0
CG1 B:VAL83 4.1 37.6 1.0
CA B:VAL83 4.1 28.2 1.0
N B:GLN85 4.2 29.5 1.0
CA B:THR88 4.2 25.8 1.0
O B:SER86 4.2 36.9 1.0
CA B:SER86 4.3 35.3 1.0
N B:SER86 4.3 32.6 1.0
C B:ALA84 4.3 28.5 1.0
C B:SER86 4.3 33.4 1.0
N B:ALA89 4.4 26.7 1.0
CA B:GLN85 4.4 29.5 0.5
CA B:GLN85 4.4 29.6 0.5
N B:ALA84 4.5 26.0 1.0
CB B:THR88 4.6 24.7 1.0
CA B:ALA89 4.6 27.6 1.0
O B:ALA84 4.7 30.6 1.0
CA B:ALA84 4.7 27.4 1.0
CB B:VAL83 4.7 29.6 1.0
O B:HOH212 4.7 29.8 1.0
N B:ASP87 4.9 32.1 1.0

Reference:

B.Nocek, A.Stein, L.Bigelow, B.Feldmann, A.Joachimiak. Crystal Structure of A Probable Acetyltransferases (Gnat Family) From Chromobacterium Violaceum Atcc 12472 To Be Published.
Page generated: Tue Dec 15 06:22:11 2020

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