Sodium in PDB 6bk7: 1.83 Angstrom Resolution Crystal Structure of N-Terminal Fragment (Residues 1-404) of Elongation Factor G From Enterococcus Faecalis

The structure of 1.83 Angstrom Resolution Crystal Structure of N-Terminal Fragment (Residues 1-404) of Elongation Factor G From Enterococcus Faecalis, PDB code: 6bk7 was solved by G.Minasov, L.Shuvalova, I.Dubrovska, A.Cardona-Correa, S.Grimshaw, K.Kwon, W.F.Anderson, K.J.F.Satchell, A.Joachimiak, Center For Structuralgenomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.95 / 1.83
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	61.450, 86.425, 75.442, 90.00, 90.17, 90.00
R / Rfree (%)	19.1 / 21.7

The binding sites of Sodium atom in the 1.83 Angstrom Resolution Crystal Structure of N-Terminal Fragment (Residues 1-404) of Elongation Factor G From Enterococcus Faecalis (pdb code 6bk7). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the 1.83 Angstrom Resolution Crystal Structure of N-Terminal Fragment (Residues 1-404) of Elongation Factor G From Enterococcus Faecalis, PDB code: 6bk7:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the 1.83 Angstrom Resolution Crystal Structure of N-Terminal Fragment (Residues 1-404) of Elongation Factor G From Enterococcus Faecalis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of 1.83 Angstrom Resolution Crystal Structure of N-Terminal Fragment (Residues 1-404) of Elongation Factor G From Enterococcus Faecalis within 5.0Å range: probe atom residue distance (Å) B Occ A:Na501 b:40.0 occ:1.00 O A:HOH770 2.3 46.3 1.0 O A:LEU99 2.4 29.7 1.0 O A:LEU96 2.4 33.8 1.0 O A:HOH698 2.4 39.1 1.0 O A:HOH653 2.5 33.2 1.0 C A:LEU99 3.6 28.7 1.0 C A:LEU96 3.6 34.1 1.0 CA A:ARG97 3.8 37.4 1.0 O A:ARG97 3.8 37.5 1.0 C A:ARG97 3.9 35.2 1.0 CA A:ASP100 4.0 27.3 1.0 N A:ARG97 4.2 35.8 1.0 N A:ASP100 4.2 26.7 1.0 OD1 A:ASP100 4.4 31.0 1.0 CD1 A:LEU99 4.5 28.9 1.0 O A:ASP100 4.5 26.7 1.0 C A:ASP100 4.5 26.7 1.0 CG2 A:VAL128 4.6 27.9 1.0 N A:LEU99 4.7 29.9 1.0 N A:VAL98 4.7 31.7 1.0 CA A:LEU99 4.7 29.7 1.0 CA A:LEU96 4.8 35.2 1.0 O A:TYR126 4.9 31.8 1.0 O A:HOH711 4.9 32.8 0.5

Sodium binding site 2 out of 2 in the 1.83 Angstrom Resolution Crystal Structure of N-Terminal Fragment (Residues 1-404) of Elongation Factor G From Enterococcus Faecalis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of 1.83 Angstrom Resolution Crystal Structure of N-Terminal Fragment (Residues 1-404) of Elongation Factor G From Enterococcus Faecalis within 5.0Å range: probe atom residue distance (Å) B Occ B:Na501 b:39.2 occ:1.00 O B:HOH767 2.3 48.7 1.0 O B:LEU96 2.4 33.8 1.0 O B:LEU99 2.4 29.8 1.0 O B:HOH674 2.5 39.0 1.0 O B:HOH692 2.5 32.8 1.0 C B:LEU96 3.5 34.6 1.0 C B:LEU99 3.6 29.2 1.0 O B:ARG97 3.8 40.0 1.0 CA B:ARG97 3.8 39.0 1.0 C B:ARG97 3.9 36.9 1.0 CA B:ASP100 4.0 27.9 1.0 N B:ARG97 4.1 35.8 1.0 N B:ASP100 4.3 26.7 1.0 CD1 B:LEU99 4.5 28.6 1.0 OD1 B:ASP100 4.5 30.4 1.0 O B:ASP100 4.6 28.4 1.0 C B:ASP100 4.6 28.1 1.0 CG2 B:VAL128 4.6 26.9 1.0 N B:VAL98 4.7 32.5 1.0 N B:LEU99 4.7 30.8 1.0 CA B:LEU96 4.7 35.5 1.0 CA B:LEU99 4.8 30.3 1.0 O B:HOH718 4.9 29.2 0.5 O B:TYR126 4.9 31.1 1.0 O B:HOH603 5.0 50.2 1.0 CG B:LEU99 5.0 29.8 1.0

G.Minasov, L.Shuvalova, I.Dubrovska, A.Cardona-Correa, S.Grimshaw, K.Kwon, W.F.Anderson, K.J.F.Satchell, A.Joachimiak. 1.83 Angstrom Resolution Crystal Structure of N-Terminal Fragment (Residues 1-404) of Elongation Factor G From Enterococcus Faecalis. To Be Published.