Sodium in PDB 3pru: Crystal Structure of Phycobilisome 32.1 kDa Linker Polypeptide, Phycocyanin-Associated, Rod 1 (Fragment 14-158) From Synechocystis Sp. Pcc 6803, Northeast Structural Genomics Consortium Target SGR182A

The structure of Crystal Structure of Phycobilisome 32.1 kDa Linker Polypeptide, Phycocyanin-Associated, Rod 1 (Fragment 14-158) From Synechocystis Sp. Pcc 6803, Northeast Structural Genomics Consortium Target SGR182A, PDB code: 3pru was solved by A.Kuzin, M.Su, P.Patel, R.Xiao, C.Ciccosanti, D.Lee, J.K.Everett, R.Nair, T.B.Acton, B.Rost, G.T.Montelione, L.Tong, J.F.Hunt, Northeast Structuralgenomics Consortium (Nesg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.77 / 2.68
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	74.354, 91.532, 124.673, 90.00, 90.00, 90.00
R / Rfree (%)	19.3 / 24.1

The structure of Crystal Structure of Phycobilisome 32.1 kDa Linker Polypeptide, Phycocyanin-Associated, Rod 1 (Fragment 14-158) From Synechocystis Sp. Pcc 6803, Northeast Structural Genomics Consortium Target SGR182A also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Sodium atom in the Crystal Structure of Phycobilisome 32.1 kDa Linker Polypeptide, Phycocyanin-Associated, Rod 1 (Fragment 14-158) From Synechocystis Sp. Pcc 6803, Northeast Structural Genomics Consortium Target SGR182A (pdb code 3pru). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Phycobilisome 32.1 kDa Linker Polypeptide, Phycocyanin-Associated, Rod 1 (Fragment 14-158) From Synechocystis Sp. Pcc 6803, Northeast Structural Genomics Consortium Target SGR182A, PDB code: 3pru:

Sodium binding site 1 out of 1 in the Crystal Structure of Phycobilisome 32.1 kDa Linker Polypeptide, Phycocyanin-Associated, Rod 1 (Fragment 14-158) From Synechocystis Sp. Pcc 6803, Northeast Structural Genomics Consortium Target SGR182A


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Phycobilisome 32.1 kDa Linker Polypeptide, Phycocyanin-Associated, Rod 1 (Fragment 14-158) From Synechocystis Sp. Pcc 6803, Northeast Structural Genomics Consortium Target SGR182A within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1 b:57.3 occ:1.00 O A:ILE147 2.8 33.9 1.0 O A:GLY144 2.8 43.0 1.0 OH A:TYR139 3.0 41.9 1.0 N A:ILE147 3.5 35.4 1.0 N A:ARG70 3.6 39.1 1.0 CA A:ARG70 3.6 40.1 1.0 CB A:ARG70 3.6 46.5 1.0 C A:ILE147 3.7 39.2 1.0 CE1 A:TYR139 3.7 43.3 1.0 C A:GLU145 3.7 41.0 1.0 O A:GLU145 3.7 43.2 1.0 CG1 A:VAL69 3.8 35.1 1.0 CZ A:TYR139 3.8 39.6 1.0 C A:GLY144 3.9 49.1 1.0 N A:ASN146 3.9 31.4 1.0 O A:PHE143 4.2 42.8 1.0 CB A:PHE143 4.2 32.3 1.0 CA A:ILE147 4.2 38.7 1.0 C A:VAL69 4.2 39.6 1.0 CB A:VAL69 4.3 33.0 1.0 C A:ASN146 4.3 39.4 1.0 CA A:GLU145 4.3 46.7 1.0 C A:PHE143 4.3 42.9 1.0 CA A:ASN146 4.4 37.2 1.0 N A:GLU145 4.5 52.1 1.0 CG A:ARG70 4.6 46.0 1.0 CG2 A:VAL73 4.7 31.8 1.0 N A:VAL148 4.7 42.5 1.0 N A:GLY144 4.7 40.4 1.0 CD A:ARG70 4.7 50.4 1.0 O A:VAL69 4.7 36.6 1.0 CA A:PHE143 4.9 41.3 1.0 CA A:VAL69 4.9 38.2 1.0 CD A:PRO149 4.9 42.4 1.0 CA A:GLY144 4.9 44.4 1.0 CD1 A:TYR139 5.0 49.1 1.0

A.Kuzin, M.Su, P.Patel, R.Xiao, C.Ciccosanti, D.Lee, J.K.Everett, R.Nair, T.B.Acton, B.Rost, G.T.Montelione, L.Tong, J.F.Hunt. Northeast Structural Genomics Consortium Target SGR182A To Be Published.