Atomistry » Sodium » PDB 3pkk-3pzs » 3plj
Atomistry »
  Sodium »
    PDB 3pkk-3pzs »
      3plj »

Sodium in PDB 3plj: Urate Oxidase Under 3.0 Mpa / 30 Bars Pressure of Equimolar Mixture Xenon : Nitrous Oxide

Enzymatic activity of Urate Oxidase Under 3.0 Mpa / 30 Bars Pressure of Equimolar Mixture Xenon : Nitrous Oxide

All present enzymatic activity of Urate Oxidase Under 3.0 Mpa / 30 Bars Pressure of Equimolar Mixture Xenon : Nitrous Oxide:
1.7.3.3;

Protein crystallography data

The structure of Urate Oxidase Under 3.0 Mpa / 30 Bars Pressure of Equimolar Mixture Xenon : Nitrous Oxide, PDB code: 3plj was solved by G.Marassio, N.Colloc'h, T.Prange, J.H.Abraini, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 14.99 / 1.73
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 80.354, 96.273, 105.577, 90.00, 90.00, 90.00
R / Rfree (%) 17.5 / 20.5

Other elements in 3plj:

The structure of Urate Oxidase Under 3.0 Mpa / 30 Bars Pressure of Equimolar Mixture Xenon : Nitrous Oxide also contains other interesting chemical elements:

Xenon (Xe) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Urate Oxidase Under 3.0 Mpa / 30 Bars Pressure of Equimolar Mixture Xenon : Nitrous Oxide (pdb code 3plj). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Urate Oxidase Under 3.0 Mpa / 30 Bars Pressure of Equimolar Mixture Xenon : Nitrous Oxide, PDB code: 3plj:

Sodium binding site 1 out of 1 in 3plj

Go back to Sodium Binding Sites List in 3plj
Sodium binding site 1 out of 1 in the Urate Oxidase Under 3.0 Mpa / 30 Bars Pressure of Equimolar Mixture Xenon : Nitrous Oxide


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Urate Oxidase Under 3.0 Mpa / 30 Bars Pressure of Equimolar Mixture Xenon : Nitrous Oxide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na303

b:27.4
occ:1.00
 O A:HOH558 2.3 35.3 1.0
O A:ILE88 2.4 23.9 1.0
O A:ILE94 2.4 20.5 1.0
O A:TYR91 2.6 22.8 1.0
OE1 A:GLU136 2.7 35.9 1.0
O A:ASN92 3.3 28.1 1.0
C A:ILE88 3.4 22.8 1.0
C A:ILE94 3.5 19.5 1.0
CD A:GLU136 3.6 37.2 1.0
C A:TYR91 3.7 23.6 1.0
C A:ASN92 3.7 26.2 1.0
CA A:ILE88 3.7 22.0 1.0
OE2 A:GLU136 3.8 40.4 1.0
CA A:ASN92 3.9 27.5 1.0
ND1 A:HIS95 4.0 27.4 1.0
N A:ILE94 4.1 20.2 1.0
CB A:ILE88 4.2 22.6 1.0
N A:ASN92 4.2 24.9 1.0
CA A:ILE94 4.3 19.4 1.0
CE1 A:HIS95 4.5 28.3 1.0
N A:HIS93 4.5 24.5 1.0
N A:HIS95 4.5 19.1 1.0
N A:GLU89 4.6 23.0 1.0
CA A:HIS95 4.6 19.1 1.0
O A:PHE87 4.7 20.7 1.0
CB A:ILE94 4.8 19.4 1.0
CA A:TYR91 4.8 22.9 1.0
CG A:GLU136 4.8 32.2 1.0
N A:TYR91 4.9 22.9 1.0
C A:HIS93 4.9 21.9 1.0
CG2 A:ILE88 5.0 22.5 1.0
CA A:GLU89 5.0 24.1 1.0

Reference:

G.Marassio, T.Prange, H.N.David, J.Sopkova-De Oliveira Santos, L.Gabison, N.Delcroix, J.H.Abraini, N.Colloc'h. Pressure-Response Analysis of Anesthetic Gases Xenon and Nitrous Oxide on Urate Oxidase: A Crystallographic Study. Faseb J. V. 25 2266 2011.
ISSN: ISSN 0892-6638
PubMed: 21421845
DOI: 10.1096/FJ.11-183046
Page generated: Mon Oct 7 12:20:41 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy