Sodium »
PDB 3pkk-3pzs »
3po4 »
Sodium in PDB 3po4: Structure of A Mutant of the Large Fragment of Dna Polymerase I From Thermus Aquaticus in Complex with A Blunt-Ended Dna and Ddatp
Enzymatic activity of Structure of A Mutant of the Large Fragment of Dna Polymerase I From Thermus Aquaticus in Complex with A Blunt-Ended Dna and Ddatp
All present enzymatic activity of Structure of A Mutant of the Large Fragment of Dna Polymerase I From Thermus Aquaticus in Complex with A Blunt-Ended Dna and Ddatp:
2.7.7.7;
2.7.7.7;
Protein crystallography data
The structure of Structure of A Mutant of the Large Fragment of Dna Polymerase I From Thermus Aquaticus in Complex with A Blunt-Ended Dna and Ddatp, PDB code: 3po4
was solved by
A.Marx,
K.Diederichs,
S.Obeid,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 48.20 / 1.80 |
| Space group | P 31 2 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 113.525, 113.525, 91.238, 90.00, 90.00, 120.00 |
| R / Rfree (%) | 16.4 / 19.4 |
Other elements in 3po4:
The structure of Structure of A Mutant of the Large Fragment of Dna Polymerase I From Thermus Aquaticus in Complex with A Blunt-Ended Dna and Ddatp also contains other interesting chemical elements:
| Magnesium | (Mg) | 3 atoms |
Sodium Binding Sites:
The binding sites of Sodium atom in the Structure of A Mutant of the Large Fragment of Dna Polymerase I From Thermus Aquaticus in Complex with A Blunt-Ended Dna and Ddatp
(pdb code 3po4). This binding sites where shown within
5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of A Mutant of the Large Fragment of Dna Polymerase I From Thermus Aquaticus in Complex with A Blunt-Ended Dna and Ddatp, PDB code: 3po4:
In total only one binding site of Sodium was determined in the Structure of A Mutant of the Large Fragment of Dna Polymerase I From Thermus Aquaticus in Complex with A Blunt-Ended Dna and Ddatp, PDB code: 3po4:
Sodium binding site 1 out of 1 in 3po4
Go back to
Sodium Binding Sites List in 3po4
Sodium binding site 1 out
of 1 in the Structure of A Mutant of the Large Fragment of Dna Polymerase I From Thermus Aquaticus in Complex with A Blunt-Ended Dna and Ddatp
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Sodium with other atoms in the Na binding
site number 1 of Structure of A Mutant of the Large Fragment of Dna Polymerase I From Thermus Aquaticus in Complex with A Blunt-Ended Dna and Ddatp within 5.0Å range:
|
Reference:
S.Obeid,
A.Schnur,
C.Gloeckner,
N.Blatter,
W.Welte,
K.Diederichs,
A.Marx.
Learning From Directed Evolution: Thermus Aquaticus Dna Polymerase Mutants with Translesion Synthesis Activity. Chembiochem V. 12 1574 2011.
ISSN: ISSN 1439-4227
PubMed: 21480455
DOI: 10.1002/CBIC.201000783
Page generated: Tue Dec 15 06:21:53 2020
ISSN: ISSN 1439-4227
PubMed: 21480455
DOI: 10.1002/CBIC.201000783
Last articles
Zn in 8WB0Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
