Atomistry » Sodium » PDB 3pkk-3pzs » 3pwm
Atomistry »
  Sodium »
    PDB 3pkk-3pzs »
      3pwm »

Sodium in PDB 3pwm: Hiv-1 Protease Mutant L76V with Darunavir

Enzymatic activity of Hiv-1 Protease Mutant L76V with Darunavir

All present enzymatic activity of Hiv-1 Protease Mutant L76V with Darunavir:
3.4.23.16;

Protein crystallography data

The structure of Hiv-1 Protease Mutant L76V with Darunavir, PDB code: 3pwm was solved by Y.Zhang, I.T.Weber, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 1.46
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 58.322, 86.329, 45.983, 90.00, 90.00, 90.00
R / Rfree (%) 14 / 18.9

Other elements in 3pwm:

The structure of Hiv-1 Protease Mutant L76V with Darunavir also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Hiv-1 Protease Mutant L76V with Darunavir (pdb code 3pwm). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Hiv-1 Protease Mutant L76V with Darunavir, PDB code: 3pwm:

Sodium binding site 1 out of 1 in 3pwm

Go back to Sodium Binding Sites List in 3pwm
Sodium binding site 1 out of 1 in the Hiv-1 Protease Mutant L76V with Darunavir


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Hiv-1 Protease Mutant L76V with Darunavir within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na701

b:26.0
occ:1.00
O A:HOH1090 2.3 10.8 0.5
O A:HOH1203 2.3 39.5 1.0
O A:HOH1089 2.5 22.2 1.0
O A:ASP60 2.5 16.0 1.0
O A:HOH1096 2.6 31.4 1.0
O A:HOH1094 2.8 28.9 1.0
C A:ASP60 3.5 15.1 1.0
N A:ASP60 3.7 13.8 1.0
CA A:ASP60 4.0 15.7 1.0
O A:ARG41 4.2 18.2 1.0
O A:HOH1223 4.3 28.4 0.5
CB A:ASP60 4.3 19.7 1.0
O A:HOH1259 4.4 30.9 0.5
CB A:GLN61 4.5 20.3 1.0
N A:GLN61 4.5 14.1 1.0
N A:ARG41 4.5 23.6 1.0
O A:PRO39 4.6 20.9 1.0
C A:TYR59 4.6 11.7 1.0
CA A:GLY40 4.8 22.1 1.0
CD1 A:ILE62 4.8 15.5 1.0
CA A:GLN61 4.9 15.4 1.0
O A:GLN61 4.9 18.8 1.0
C A:GLN61 4.9 14.8 1.0
OE1 A:GLN61 5.0 44.5 1.0

Reference:

J.M.Louis, Y.Zhang, J.M.Sayer, Y.F.Wang, R.W.Harrison, I.T.Weber. The L76V Drug Resistance Mutation Decreases the Dimer Stability and Rate of Autoprocessing of Hiv-1 Protease By Reducing Internal Hydrophobic Contacts. Biochemistry V. 50 4786 2011.
ISSN: ISSN 0006-2960
PubMed: 21446746
DOI: 10.1021/BI200033Z
Page generated: Tue Dec 15 06:21:59 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy